Pairwise Alignments

Query, 338 a.a., phage shock protein operon transcriptional activator from Vibrio cholerae E7946 ATCC 55056

Subject, 349 a.a., sigma-54 dependent transcriptional regulator (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  206 bits (523), Expect = 9e-58
 Identities = 128/327 (39%), Positives = 176/327 (53%), Gaps = 19/327 (5%)

Query: 5   LLGESPAFLAVLDKVSRLAPIDRPVLVIGERGTGKELIAQRLHYLSKRWEQPLVSLNCST 64
           ++G+S     V   + ++AP D  VLV GE GTGKEL+ + LH  S+R +QP V +NC  
Sbjct: 8   IIGQSTTLCQVFRMLGKVAPTDSTVLVTGESGTGKELLVRALHANSQRAQQPFVPINCGA 67

Query: 65  LSEGLIDSELFGHESGSFTGAKGRHQGRFERAEGGTLFLDELATAPLSVQEKLLRVIEYG 124
           + + L++SELFGHE G+FT A     GRFE A+GGT+FLDE+    L +Q K+LRV++  
Sbjct: 68  IPKDLLESELFGHEKGAFTHAIRSRPGRFELADGGTIFLDEIGEMDLMLQVKILRVLQEK 127

Query: 125 QYERVGGNQVLNANVRLVCATNANLPQMAQQGTFRADLLDRLAFDVIHLPALRHRPEDIA 184
           + ERVGG      +VR+V ATN +L +    G FR DL  RL    +HLP LR R  DI 
Sbjct: 128 EIERVGGTGTKKVDVRIVAATNRDLEREVAAGRFREDLYYRLNVIPLHLPPLRERGGDIL 187

Query: 185 LLAEHFAIRMCRELQLPLFVGFSPNALHQLQAYSWPGNVRELKNVVER-AVYQHGLNSQP 243
           +LAEHF  R C   Q    +  +P+    L AYSWPGN+REL+N +ER ++   G    P
Sbjct: 188 VLAEHFLERFCERKQRAR-LALAPDTRKVLAAYSWPGNIRELENFMERVSILAEGDIVDP 246

Query: 244 IDQLVFNPFQSSDIVT--------DESEQVDVRHTTRTDFHLP---------LDYKAWQQ 286
            D       +  DIVT          +   DV       F  P         +  K +  
Sbjct: 247 ADLPRKLLDEVGDIVTLPEPAPVAPAAHAADVCRPAGGGFDWPTIADMRQRGMGLKDFLD 306

Query: 287 QCDIELLQAALTQAKFNQKHAAQLLGL 313
             +  LLQ AL  A+  +  AA++LG+
Sbjct: 307 TMEDRLLQEALAMAEGVKNQAAEILGI 333