Pairwise Alignments

Query, 338 a.a., phage shock protein operon transcriptional activator from Vibrio cholerae E7946 ATCC 55056

Subject, 551 a.a., sigma-54 dependent transcriptional regulator (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  218 bits (556), Expect = 2e-61
 Identities = 116/230 (50%), Positives = 152/230 (66%), Gaps = 1/230 (0%)

Query: 5   LLGESPAFLAVLDKVSRLAPIDRPVLVIGERGTGKELIAQRLHYLSKRWEQPLVSLNCST 64
           ++G+ PA+L VL +V  +AP D  VLV GE GTGKEL+A+ +H  S+R   PLV +NCS 
Sbjct: 225 IVGDCPAWLRVLAQVDMVAPTDATVLVQGESGTGKELVAEAIHRRSQRSTAPLVRVNCSA 284

Query: 65  LSEGLIDSELFGHESGSFTGAKGRHQGRFERAEGGTLFLDELATAPLSVQEKLLRVIEYG 124
           +   L +SE FGH  G+FTGA     GRF+ A+GGTLFLDE+   PL +Q KLLRV++ G
Sbjct: 285 IPRELFESEFFGHVKGAFTGAVRDRIGRFQMADGGTLFLDEVGEIPLELQGKLLRVLQEG 344

Query: 125 QYERVGGNQVLNANVRLVCATNANLPQMAQQGTFRADLLDRLAFDVIHLPALRHRPEDIA 184
            +ERVG ++  + +VR++ ATN +L Q    G FR DL  RL+   + LP LR R  DI 
Sbjct: 345 TFERVGEDRTRSVDVRIIAATNRDLRQEVDAGRFRQDLFFRLSVFPVELPPLRDRQGDIP 404

Query: 185 LLAEHFAIRMCRELQLPLFVGFSPNALHQLQAYSWPGNVRELKNVVERAV 234
           LLA HF  +  R L LP     +P AL +L AY WPGNVRE++NV+ERAV
Sbjct: 405 LLARHFIAQSSRRLGLPT-PRLTPAALARLSAYPWPGNVREMQNVIERAV 453