Pairwise Alignments

Query, 338 a.a., phage shock protein operon transcriptional activator from Vibrio cholerae E7946 ATCC 55056

Subject, 462 a.a., sigma-54 dependent transcriptional regulator/response regulator (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  213 bits (542), Expect = 8e-60
 Identities = 127/321 (39%), Positives = 183/321 (57%), Gaps = 14/321 (4%)

Query: 5   LLGESPAFLAVLDKVSRLAPIDRPVLVIGERGTGKELIAQRLHYLSKRWEQPLVSLNCST 64
           ++GES A   V   + R+AP++  VL++GE GTGKELIA  +  LS R   P V +NC+ 
Sbjct: 143 IVGESRAMRDVKALLERIAPLESTVLIMGESGTGKELIADTIRALSPRAANPFVKVNCAA 202

Query: 65  LSEGLIDSELFGHESGSFTGAKGRHQGRFERAEGGTLFLDELATAPLSVQEKLLRVIEYG 124
           + E L ++ELFGHE G+FTGA     G+FE+A+GG + LDE+   PL++Q KLLRV+E  
Sbjct: 203 IPEHLFENELFGHEKGAFTGAATAMPGKFEQAQGGMIMLDEIGDMPLAIQPKLLRVVEQK 262

Query: 125 QYERVGGNQVLNANVRLVCATNANLPQMAQQGTFRADLLDRLAFDVIHLPALRHRPEDIA 184
           Q ER+GG   +  +VR++ ATN NL +  ++  FR DL  RL+  V+ +P LR R +DI 
Sbjct: 263 QVERLGGRAPVPLDVRIIAATNQNLAERVREKAFREDLYYRLSVAVVLIPPLRDRKDDIP 322

Query: 185 LLAEHFAIRMCRELQLPLFVGFSPNALHQLQAYSWPGNVRELKNVVERAVYQHGLNSQPI 244
           LLA++F  ++   L LP+  G SP+A+  L  + WPGNVR+L NV+ERA           
Sbjct: 323 LLAQYFVNKLEGTLGLPVH-GLSPDAIAVLMDHDWPGNVRQLANVLERAAI-------AA 374

Query: 245 DQLVFNPFQSSDIVTDESEQVDVRHTTRTDFHLPLDYKAWQQQCDIELLQAALTQAKFNQ 304
           D L+      + I T     VD    +       +D K   +  +  L+  AL +    Q
Sbjct: 375 DGLICARDVMAAIGTARGSNVDKATLS------GMDLKTTLRMVERNLILDALRRCHGRQ 428

Query: 305 KHAAQLLGLSYHQFRGMMRKY 325
             AA LLGL+       +RK+
Sbjct: 429 TEAAVLLGLTPKNLWAKLRKH 449