Pairwise Alignments

Query, 338 a.a., phage shock protein operon transcriptional activator from Vibrio cholerae E7946 ATCC 55056

Subject, 469 a.a., sigma-54 dependent trancsriptional regulator (RefSeq) from Shewanella sp. ANA-3

 Score =  208 bits (530), Expect = 2e-58
 Identities = 133/324 (41%), Positives = 177/324 (54%), Gaps = 19/324 (5%)

Query: 5   LLGESPAFLAVLDKVSRLAPIDRPVLVIGERGTGKELIAQRLHYLSKRWEQPLVSLNCST 64
           L+G S     +   + R++  +  VL+IGE G GKEL+A  +H  S R  +P +++NC  
Sbjct: 142 LVGSSLPMHRLYRTIRRVSAAESNVLIIGESGAGKELVANTIHLASPRVNKPYIAINCGA 201

Query: 65  LSEGLIDSELFGHESGSFTGAKGRHQGRFERAEGGTLFLDELATAPLSVQEKLLRVIEYG 124
           LS  L+DSELFGH  GSFTGA   HQG FE+AEGGTLFLDE+   PL  Q KLLRV+E  
Sbjct: 202 LSPELVDSELFGHVKGSFTGANRDHQGVFEQAEGGTLFLDEVTEMPLEHQVKLLRVLENN 261

Query: 125 QYERVGGNQVLNANVRLVCATNANLPQMAQQGTFRADLLDRLAFDVIHLPALRHRPEDIA 184
           +Y  VG  +VL ANVR+V ATN +     +QG  R DL  RLA   I +P LR R EDI 
Sbjct: 262 EYRPVGSPKVLKANVRIVAATNRDPLVAIEQGQLREDLYFRLAHFPIQVPPLRERGEDIV 321

Query: 185 LLAEHF-AIRMCRELQLPLFVGFSPNALHQLQAYSWPGNVRELKNVVERAVYQHGLNSQP 243
            LA+HF A R   E Q  +   FSP++L  + A++WPGNVRELK+ +ERA         P
Sbjct: 322 GLAKHFLAYRNAAEKQSKV---FSPSSLEAIAAHAWPGNVRELKHAIERAYILADHEITP 378

Query: 244 IDQLVFNPFQSSDIVTDESEQVDVRHTTRTDFHLPLDYKAWQQQCDIELLQAALTQAKFN 303
            + L   P  S D      E V +    R             ++ +   +  AL  ++ N
Sbjct: 379 -EHLQLTP--SLDKEAAAEENVVIPQGMRL------------EELEKIAIYQALETSQGN 423

Query: 304 QKHAAQLLGLSYHQFRGMMRKYPQ 327
           +   A+ LG+S       + KY Q
Sbjct: 424 KTDTAEQLGISVKTLYNKLSKYEQ 447