Pairwise Alignments

Query, 338 a.a., phage shock protein operon transcriptional activator from Vibrio cholerae E7946 ATCC 55056

Subject, 362 a.a., Fis family transcriptional regulator (RefSeq) from Shewanella sp. ANA-3

 Score =  392 bits (1006), Expect = e-114
 Identities = 192/350 (54%), Positives = 258/350 (73%), Gaps = 26/350 (7%)

Query: 2   QQSLLGESPAFLAVLDKVSRLAPIDRPVLVIGERGTGKELIAQRLHYLSKRWEQPLVSLN 61
           Q +L+G+S A L VL+ VS++AP+ +PVL+IGERGTGKELIA+RLHYLSKRW+Q  + LN
Sbjct: 7   QDNLIGQSNALLEVLEHVSQIAPLSKPVLIIGERGTGKELIAERLHYLSKRWDQSFIKLN 66

Query: 62  CSTLSEGLIDSELFGHESGSFTGAKGRHQGRFERAEGGTLFLDELATAPLSVQEKLLRVI 121
           CS+LSE L++SELFGHESG+FTGAKG+H+GRFERA+GGTLFLDELA     +QEKLLRVI
Sbjct: 67  CSSLSENLLESELFGHESGAFTGAKGKHEGRFERADGGTLFLDELANTSGLIQEKLLRVI 126

Query: 122 EYGQYERVGGNQVLNANVRLVCATNANLPQMAQQGTFRADLLDRLAFDVIHLPALRHRPE 181
           EYG++ERVGG++ + A+VRL+CA N +LP +A  G FRADLLDRLAFDVI LP LR RPE
Sbjct: 127 EYGEFERVGGSKTIQADVRLICAANEDLPSLADAGEFRADLLDRLAFDVITLPPLRCRPE 186

Query: 182 DIALLAEHFAIRMCRELQLPLFVGFSPNALHQLQAYSWPGNVRELKNVVERAVYQHGLNS 241
           DI  LAE+FA+ M R+L+L LF GFS +A+ QL ++ WPGN+RELKNVVER+VY++   +
Sbjct: 187 DIMTLAEYFAVGMARQLKLELFSGFSASAVDQLMSHDWPGNIRELKNVVERSVYRNSGEN 246

Query: 242 QPIDQLVFNPFQ-----------------------SSDIVTDESEQVD---VRHTTRTDF 275
            PI+Q++ +PF                        S+ ++T      D   +  +    F
Sbjct: 247 HPIEQIILDPFASPYRPTTRVRTRERQISAPEAPLSAPVITSAKTDTDTAAIAESMTNPF 306

Query: 276 HLPLDYKAWQQQCDIELLQAALTQAKFNQKHAAQLLGLSYHQFRGMMRKY 325
             PLD+K   ++ ++EL+Q AL+ +++NQK  A++LGLSYHQ RG+++KY
Sbjct: 307 SFPLDFKEQTERYEMELIQQALSASQYNQKKTAEILGLSYHQLRGILKKY 356