Pairwise Alignments

Query, 338 a.a., phage shock protein operon transcriptional activator from Vibrio cholerae E7946 ATCC 55056

Subject, 508 a.a., sigma-54 dependent trancsriptional regulator (RefSeq) from Shewanella sp. ANA-3

 Score =  216 bits (551), Expect = 8e-61
 Identities = 124/325 (38%), Positives = 185/325 (56%), Gaps = 7/325 (2%)

Query: 1   MQQSLLGESPAFLAVLDKVSRLAPIDRPVLVIGERGTGKELIAQRLHYLSKRWEQPLVSL 60
           +Q  ++G +     V+ +V  +A I+  VL++GE G GKE+IA  +H LS+R  +P + +
Sbjct: 186 IQNGVVGANSGLKQVMQQVQSIAKINTTVLMLGETGCGKEVIANAIHELSERSGKPFIKV 245

Query: 61  NCSTLSEGLIDSELFGHESGSFTGAKGRHQGRFERAEGGTLFLDELATAPLSVQEKLLRV 120
           NC  + + LIDSELFG+E G+FTGA  R  G FE+A GGT+FLDE+   PLS Q +LLRV
Sbjct: 246 NCGAIPDTLIDSELFGYEKGAFTGADSRKVGYFEQANGGTIFLDEIGELPLSAQVRLLRV 305

Query: 121 IEYGQYERVGGNQVLNANVRLVCATNANLPQMAQQGTFRADLLDRLAFDVIHLPALRHRP 180
           ++     RVGG+  +  ++R+V AT+ NL  M  +  FR DL  RLA   I +P+LR R 
Sbjct: 306 LQNSCITRVGGHDAVQLDIRIVAATHRNLQAMVHREVFREDLWYRLAIFPIEIPSLRQRR 365

Query: 181 EDIALLAEHFAIRMCRELQLPLFVGFSPNALHQLQAYSWPGNVRELKNVVERAVYQHGLN 240
            DI LL +HF  ++  +  LP     +P  L+ L  Y WPGNVREL NV+ERA+ QH   
Sbjct: 366 TDIPLLVQHFIEQLSAKFNLPQLPRIAPEQLNILNQYGWPGNVRELINVLERAIIQH--P 423

Query: 241 SQPIDQLVFNPFQSSDIVTDESEQVDVRHTTRTDFHLPLDYKAWQQQCDIELLQAALTQA 300
           + P+D     P     + T  ++ V +  +  +D  +PL+    +           +T  
Sbjct: 424 AGPLDFSFLAPKSLEAVKTPSNQTVIIDPSHASDKLVPLEVMTKKYISH----ALRITGG 479

Query: 301 K-FNQKHAAQLLGLSYHQFRGMMRK 324
           K +    AA+LL ++ +  R  M+K
Sbjct: 480 KLYGPGGAAELLDINANTLRSKMKK 504