Pairwise Alignments

Query, 343 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 382 a.a., Probable Co/Zn/Cd efflux system membrane fusion protein from Pseudomonas fluorescens FW300-N2E2

 Score =  100 bits (248), Expect = 8e-26
 Identities = 74/295 (25%), Positives = 141/295 (47%), Gaps = 23/295 (7%)

Query: 61  LAFRVPGQLQTIDVLAGQEVKKGEVLARLNPDEYALLEQQASANFQLADVQFQRAQRLRQ 120
           L+  + G +Q +   +GQ+VK G+ L +L+ +  + L + A A+  LA + F R ++L  
Sbjct: 72  LSLEIAGTVQKVQFQSGQKVKAGQPLLQLDSEVESALLETAEADLGLAQLDFGRGRQLVG 131

Query: 121 DKVVSEQDFDQAQANHNSAKATWEQAKANLRYTQLIAPYDGTISLIPAEQYEYVAAKQGV 180
            + +S+ +FD+  A     +AT  Q KA+L   Q++AP+ GTI +   +  +Y+A+   +
Sbjct: 132 SQAISKGEFDRLSAQLKKNQATVNQLKASLAKKQILAPFSGTIGIRQVDVGDYLASGTVI 191

Query: 181 MNIQTNQLLKVQFLLPDHLLNRFSRDGVEAHMVFDSFPNRQYPLQFQEIDTEADSKTRSY 240
             +Q    L V F +P+  + R +      ++   ++P + +      I+ + +  TR+ 
Sbjct: 192 ATLQDLSSLYVDFYVPEQTVPRLA-VAQPVNVSVSAYPGQTFVGTISAINPKVEDSTRNV 250

Query: 241 KVTMVMERPNDVGILPGMAGRVSLMAPSGSA-TVIPTSALFAEQGGKYVWRV-------- 291
            V   +  P D  +LPGM   + ++ P  +A  V+P SA+     G  ++ V        
Sbjct: 251 LVRATLANP-DGKLLPGMFANLQVILPDVAAGIVVPESAVTYTLYGNSMYVVAQKKAADG 309

Query: 292 ----DDAG----LVSKAAVTLNEQRQ----VLTGLNDGDRIIISGVSGVTEGIKV 334
               DD G    +  +  V   E+R     V  G+  GD+++I+G   +  G  +
Sbjct: 310 TVEKDDKGQPVLIAERRFVETGERRDGQVLVTKGVQSGDQVVIAGQIKLDNGTPI 364