Pairwise Alignments

Query, 343 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 354 a.a., Efflux membrane fusion protein, RND family from Pseudomonas fluorescens FW300-N2E2

 Score = 99.4 bits (246), Expect = 1e-25
 Identities = 94/341 (27%), Positives = 152/341 (44%), Gaps = 23/341 (6%)

Query: 14  LLVGCGKELPPVPEPDSRPAKLTTVSVGNNTFSRQFPATTAAGDRAVLAFRVPGQLQTID 73
           LL  C +E  P PEP  RP     V   +     +F     A   + + FRVPG++ + +
Sbjct: 12  LLAACSQEEAP-PEP-VRPVLSIEVRALDQQALGRFAGNIQARYESNVGFRVPGRIASRN 69

Query: 74  VLAGQEVKKGEVLARLNPDEY-----------ALLEQQ---ASANFQLADVQFQRAQRLR 119
           V  G EVKKG++LA L+P +            A +E Q   A AN +     F R    +
Sbjct: 70  VDVGAEVKKGDLLATLDPTDQQNQLRAAQGDLARIEAQYINAQANARRQQQLFDRGVGAQ 129

Query: 120 QDKVVSEQDFDQAQANHNSAKATWEQAKANLRYTQLIAPYDGTISLIPAEQYEYVAAKQG 179
               +++ D     A+   A+A+ EQA+  L Y++L   +D  ++   AE  + V A Q 
Sbjct: 130 AQLDIAQTDLKTTGASLEQARASVEQARDQLNYSELHTDHDAVVTAWNAEAGQVVTAGQQ 189

Query: 180 VMNIQTNQLLKVQFLLPDHLLNRFSRDGVEAHMVFDSFPNRQYPLQFQEIDTEADSKTRS 239
           V+ +    + +    LP  L++R   D V   +     P+       +EI+ +A S TR+
Sbjct: 190 VVTLARPDIKEAVIDLPADLVDRLPAD-VVFEVTAQMDPSIHTTATVREIEPQAQSATRT 248

Query: 240 YKVTMVMERPNDVGILPGMAGRVSLMAPSGSATVIPTSALFAEQGGKYVWRVD-DAGLVS 298
            +  + +      G   G A  V+L +       +P SAL    G   +W VD  +  VS
Sbjct: 249 RRARLTL-ADTPPGFRLGTAISVTLSSTIEPRIELPLSALQEIDGKARIWLVDPHSQTVS 307

Query: 299 KAAVTLNEQRQ----VLTGLNDGDRIIISGVSGVTEGIKVR 335
              V + E+      V  G+  GDR++ +GV+ +  G KV+
Sbjct: 308 PRDVRILERSASSVLVANGIKAGDRVVSAGVNSLQPGQKVK 348