Pairwise Alignments

Query, 343 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 366 a.a., RND efflux membrane fusion protein from Pseudomonas fluorescens FW300-N2E2

 Score =  104 bits (259), Expect = 4e-27
 Identities = 97/340 (28%), Positives = 151/340 (44%), Gaps = 23/340 (6%)

Query: 14  LLVGCGKELPPVPEPDSRPAKLTTVSVGNNTFSRQFPATTAAGDRAVLAFRVPGQLQTID 73
           LL  CG +  PVP    RPA +             +P    A     LAFR+ G++    
Sbjct: 17  LLSACGHD-EPVPVA-VRPAMVVKPQPSVQAMD-SYPGEVRARFEPDLAFRIGGKVSRRL 73

Query: 74  VLAGQEVKKGEVLARLNPDEYAL-LE------QQASANFQLADVQFQRAQRLRQDKVVSE 126
           V  GQ VK  + LA L+P++  L LE        A AN  L   +  R + L + ++VS 
Sbjct: 74  VEEGQRVKANQPLAELDPEDVRLQLEAARAQVAAAEANLNLVRAERDRYKTLMERQMVSR 133

Query: 127 QDFDQAQANHNSAKATWEQAKANL-------RYTQLIAPYDGTISLIPAEQYEYVAAKQG 179
             +D A+  + S  A  +Q KA          Y+ L AP DG ++    E  + V+A Q 
Sbjct: 134 SQYDNAENLYRSGTARLKQIKAEFDVANNQASYSILRAPQDGVVARRSVEVGQVVSAGQT 193

Query: 180 VMNIQTNQLLKVQFLLPDHLLNRFSRDGVEAHMVFDSFPNRQYPLQFQEIDTEADSKTRS 239
           V  + T+   +V   LP+    RF + G    +   S P++++  + +E+   AD K+R+
Sbjct: 194 VFTLATDGEREVLISLPEQGFGRF-KIGQPVSVELWSQPDQRFSGRIRELSPAADPKSRT 252

Query: 240 YKVTMVMERPNDVGILPGMAGRVSLMAPSGSATVIPTSALFAEQGGKYVWRVDDAGLVSK 299
           +   +     N    L G + RV +         +P SAL AE G  YVW V+    + K
Sbjct: 253 FAARVAFTAGNVPAEL-GQSARVFIQTADKVPLSVPLSALTAENGATYVWVVNANNTLKK 311

Query: 300 AAVTL----NEQRQVLTGLNDGDRIIISGVSGVTEGIKVR 335
             V +     +   VL GL   D ++ +GV  + +G +VR
Sbjct: 312 VPVRVGAFGEKTVPVLEGLGPDDWVVAAGVHVLLDGQQVR 351