Pairwise Alignments

Query, 343 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 382 a.a., Probable Co/Zn/Cd efflux system membrane fusion protein from Pseudomonas fluorescens FW300-N1B4

 Score = 99.0 bits (245), Expect = 2e-25
 Identities = 78/321 (24%), Positives = 147/321 (45%), Gaps = 18/321 (5%)

Query: 25  VPEPDSRPAKLTTVSVGNNTFSRQFPA--TTAAGDRAVLAFRVPGQLQTIDVLAGQEVKK 82
           VP+P   P  +   +     +  + P   T  A     L+  + G ++ +   +GQ+VK 
Sbjct: 37  VPKP---PISVAVATATERPWQSRLPTVGTLTALQGVDLSLEIAGTVKEVQFESGQKVKA 93

Query: 83  GEVLARLNPDEYALLEQQASANFQLADVQFQRAQRLRQDKVVSEQDFDQAQANHNSAKAT 142
           G+ + +L+      L   A A+  LA + + R  +L   + +S+ +FD+  A    ++AT
Sbjct: 94  GQPILQLDTAVETALLATAQADLGLAQLDYGRGSQLVGSQAISKGEFDRLSAVLQKSRAT 153

Query: 143 WEQAKANLRYTQLIAPYDGTISLIPAEQYEYVAAKQGVMNIQTNQLLKVQFLLPDHLLNR 202
             Q KA L   +++AP+ GTI +   +  +YVA+   +  +Q    L V F +P+  + +
Sbjct: 154 VNQLKAALERKRILAPFSGTIGIRQVDVGDYVASGTMIATLQDISSLYVDFFVPEQSVPK 213

Query: 203 FSRDGVEAHMVFDSFPNRQYPLQFQEIDTEADSKTRSYKVTMVMERPNDVGILPGMAGRV 262
            +  G    ++  ++P   +P     I+ + +S TR+  V   +  P+D  +LPGM   +
Sbjct: 214 IAL-GQPVQVIVSAYPTESFPGTISAINPKVESSTRNVLVRATLANPDD-KLLPGMFASL 271

Query: 263 SLMAPSGS-ATVIPTSALFAEQGGKYVW-----RVDDAGLVSK---AAVTLNEQRQVLTG 313
            +M P      V+P SA+     G  ++     + +D  L        + + E+R + TG
Sbjct: 272 QVMLPDPQPRIVVPESAITYTLYGNSLYVVAQKKAEDGSLEKDDKGEPILIAERRFIETG 331

Query: 314 LNDGDRIIISGVSGVTEGIKV 334
                 ++I+   GV  G KV
Sbjct: 332 ERRDGMVMIT--KGVQNGEKV 350