Pairwise Alignments

Query, 343 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 359 a.a., RND family efflux transporter, MFP subunit from Pseudomonas stutzeri RCH2

 Score =  112 bits (279), Expect = 2e-29
 Identities = 89/334 (26%), Positives = 154/334 (46%), Gaps = 22/334 (6%)

Query: 1   MNKTLLAFSICST-LLVGCGKELPPVPEPDSRPAKLTTVSVGNNTFSRQFPATTAAGDRA 59
           ++K  L    C+  LL GC  E  P PEP             +   + +F     +    
Sbjct: 9   VSKAWLTIIACALPLLGGCSSEAEPAPEPPRVALVEPLRPAESKAEALRFSGVVQSVTST 68

Query: 60  VLAFRVPGQLQTIDVLAGQEVKKGEVLARLNPDEYALLEQQASANFQLADVQFQRAQRLR 119
            L+F V G+++ I +  G  V++G+ LA+L+  +Y L  ++A A  +  +    R + L 
Sbjct: 69  QLSFEVSGRIERILIDEGTRVRRGQTLAQLDRTDYRLQLREAEARLRQLEADLARKRTLL 128

Query: 120 QDKVVSEQDFDQAQANHNSAKATWEQAKANLRYTQLIAPYDGTISLIPAEQYEYVAAKQG 179
            + +++    +  QAN  +A+   + A+ N+ ++ L AP+DG ++   AE    VA    
Sbjct: 129 AEGILAPAAIEALQANTVAARVARDSAQRNIDHSTLTAPFDGVVARRLAEPDMVVAVGTP 188

Query: 180 VMNIQTNQLLKVQFLLPDHLLNRFSRD---GVEAHMVFDSFPNRQYPLQFQEIDTEADSK 236
           V  +Q N+ ++V   LP+              EA +V     + + PL+++E  T+    
Sbjct: 189 VFEMQDNRHIEVSVDLPESAALSIPLGPELQAEAELV---IADLRLPLRYKEHSTQPREG 245

Query: 237 TRSYKVTMVMERPNDVGILPGMAGRVSLMAPSGSAT-----VIPTSALFAEQGGK-YVWR 290
            R+Y++ +  E P D  +LPGMA RV L  P+   T      +P SAL     GK ++W+
Sbjct: 246 ARTYRLVLQGEPPEDFNLLPGMAMRVRLERPAQPETDNDGFRLPLSALQTGSDGKHFIWQ 305

Query: 291 VDDAGLVSKAAVTLNEQRQVLTGLNDGDRIIISG 324
             D G   + AV L +         +GD+ +I G
Sbjct: 306 AAD-GRARRLAVELQQV--------EGDQALIRG 330