Pairwise Alignments

Query, 343 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 413 a.a., RND family efflux transporter, MFP subunit from Pseudomonas stutzeri RCH2

 Score = 86.7 bits (213), Expect = 1e-21
 Identities = 82/304 (26%), Positives = 139/304 (45%), Gaps = 35/304 (11%)

Query: 61  LAFRVPGQLQTIDVLAGQEVKKGEVLARLNPDEYALLEQQASANFQL-------ADVQFQ 113
           L  RV G+L  +    GQ VKKG++LA ++P  Y +  QQA    Q        A V F+
Sbjct: 86  LRSRVGGELVELRFEEGQRVKKGDLLAVIDPRPYKVALQQAEGTLQQNRAQLKNAQVDFE 145

Query: 114 RAQRLRQDKVVSEQDFD-------QAQANHNSAKATWEQAKANLRYTQLIAPYDGTISLI 166
           R + L  D  +++Q  D       Q Q    + +A+  +A+ NL +TQ+ +P DG + L 
Sbjct: 146 RYRGLFADDSIAKQTLDTQEALVSQYQGTLAANQASVNEARLNLEFTQIRSPIDGRVGLR 205

Query: 167 PAEQYEYVAAKQ--GVMNIQTNQLLKVQFLLPD----HLLNRFSRDGVEAHMVFDSFPNR 220
             +    VAA     ++ I   Q + + F LP+     +L R+ +    A  ++D    R
Sbjct: 206 QLDVGNLVAANDTTPLVVITQTQPMSISFTLPEGDLLPVLTRYRQGDKLAVQIWD----R 261

Query: 221 QYPLQFQE-----IDTEADSKTRSYKVTMVMERPNDVGILPGMAGRVSLMAPS-GSATVI 274
              L F E     ID + D+ T + ++    +   ++ ++P     V L   +   A +I
Sbjct: 262 GEKLMFGEGLLESIDNQIDATTGTLRLKARFDNEQEL-LIPNQFVNVRLRVETLSDAVLI 320

Query: 275 PTSALFAEQGGKYVWRVDDAGLVS----KAAVTLNEQRQVLTGLNDGDRIIISGVSGVTE 330
           P++AL     G + + V +   V     KA  +  E   VL GL  G+R+++ G   + +
Sbjct: 321 PSAALQFGSRGTFAYVVGEDNKVQLRLLKAGPSNGETTVVLEGLEVGERVVMEGTDRLRD 380

Query: 331 GIKV 334
           G +V
Sbjct: 381 GAEV 384