Pairwise Alignments

Query, 343 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 366 a.a., RND family efflux transporter, MFP subunit from Pseudomonas stutzeri RCH2

 Score =  113 bits (282), Expect = 9e-30
 Identities = 102/343 (29%), Positives = 156/343 (45%), Gaps = 23/343 (6%)

Query: 11  CSTLLVGCGKELPPVPEPDSRPAKLTTVSVGNNTFSRQFPATTAAGDRAVLAFRVPGQLQ 70
           C+  LV CG   PP   P  RP  +      +      +P    A     LAFR+ G++ 
Sbjct: 14  CALALVACGNGEPPQQLP--RPVMVVQPQPASEA-RESYPGEVHARYEPELAFRIGGKVV 70

Query: 71  TIDVLAGQEVKKGEVLARLNPDEYAL----LEQQ---ASANFQLADVQFQRAQRLRQDKV 123
              V AG  V+K + LARL+P +  L    +  Q   A AN ++A  +  R + L   ++
Sbjct: 71  ERLVEAGDRVRKDQPLARLDPQDVRLQLDGMRAQVAAAEANLRVAKAEHDRYKALLGRQL 130

Query: 124 VSEQDFDQAQANHNSAKATWEQAKAN-------LRYTQLIAPYDGTISLIPAEQYEYVAA 176
           VS+  FD A   + +A A  +QA+A        + Y  L A  DG I+    E  + VAA
Sbjct: 131 VSQSQFDNADNAYRAAAARLQQARAEFDVASNQVDYAVLRATSDGLIAQRRIEVGQVVAA 190

Query: 177 KQGVMNIQTNQLLKVQFLLPDHLLNRFSRDGVEAHMVFDSFPNRQYPLQFQEIDTEADSK 236
            Q    +  +   +V   LP+  L R+ R G +  +   S P R Y  + +E+   AD++
Sbjct: 191 GQTAFVLAADGEREVAIDLPEQSLERY-RVGQDVEVELWSQPGRHYLGKIRELSPAADAQ 249

Query: 237 TRSYKVTMVMERPNDVGILPGMAGRVSLMAPSGSATVIPTSALFAEQGGKYVWRVDDAGL 296
           +R+Y   +      +V    G +  VS+      A  +P SAL AEQG  +VWR+     
Sbjct: 250 SRTYSARVAFSE-QEVPAELGQSALVSIRRAGEVALAVPLSALSAEQGRAHVWRLKADST 308

Query: 297 VSKAAV---TLNEQR-QVLTGLNDGDRIIISGVSGVTEGIKVR 335
           V +  V      EQ   VL GL   D I+++GV  +++   VR
Sbjct: 309 VERVEVRTGPFGEQLVPVLEGLEADDWIVLAGVQMLSDHQSVR 351