Pairwise Alignments

Query, 343 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 377 a.a., RND family efflux transporter, MFP subunit from Pseudomonas stutzeri RCH2

 Score = 96.7 bits (239), Expect = 9e-25
 Identities = 69/282 (24%), Positives = 139/282 (49%), Gaps = 8/282 (2%)

Query: 52  TTAAGDRAVLAFRVPGQLQTIDVLAGQEVKKGEVLARLNPDEYALLEQQASANFQLADVQ 111
           T  A     L+  + G +  +   +G++V KG+ +  L+ +        A A+  L+ V+
Sbjct: 62  TLRASQGIDLSVEIAGTITDVQFQSGEKVSKGQPIVLLDSEMERASLASAEADLNLSRVE 121

Query: 112 FQRAQRLRQDKVVSEQDFDQAQANHNSAKATWEQAKANLRYTQLIAPYDGTISLIPAEQY 171
           FQRA+ L   + +S  ++D+  A    A+A+  Q +A+L   +++AP+ GTI +   +  
Sbjct: 122 FQRARSLLDRQAISRSEYDRLNAESQKAEASVAQLRASLAKKRILAPFAGTIGIRQVDVG 181

Query: 172 EYVAAKQGVMNIQTNQLLKVQFLLPDHLLNRFSRDGVEAHMVFDSFPNRQYPLQFQEIDT 231
           +Y+AA   +  +Q    L V F L +  +   +  G +  +   ++P++++      ++ 
Sbjct: 182 DYIAAGTPIATLQDLSTLYVDFFLAEQHVPLLAL-GQKVQLRVAAYPDQRFEGVITALNP 240

Query: 232 EADSKTRSYKVTMVMERPNDVGILPGMAGRVSLMAPSGSA-TVIPTSALFAEQGGKYVWR 290
           + ++ TR+ +V   +  P D  +LPGM   + ++ P+ +A  V+P +A+     G  V  
Sbjct: 241 KVETTTRNVQVRAELANP-DGRLLPGMFADLQVLLPTETAQVVVPETAITYTLYGNSVLL 299

Query: 291 VDDA----GLVSKAAVTLNEQRQVLTG-LNDGDRIIISGVSG 327
           V +     G+ +     + E+R V TG   DG  +I+ G+ G
Sbjct: 300 VTEGTPPEGVTTDEPYLVVERRFVTTGERRDGVTVILEGLEG 341