Pairwise Alignments

Query, 343 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 398 a.a., RND transporter from Azospirillum brasilense Sp245

 Score = 88.2 bits (217), Expect = 3e-22
 Identities = 87/335 (25%), Positives = 151/335 (45%), Gaps = 33/335 (9%)

Query: 19  GKELPPVP----EPDSRPAKLTTVSVGNNTFSRQFPATTAAGDRAVLAFRVPGQLQTIDV 74
           G + PP P    E  ++     T ++G  T SRQ            +A  V G++  I  
Sbjct: 61  GNKPPPTPVSVAEATAQSVPKYTTAIGTLTASRQ----------VTVAPEVVGRVTQIFF 110

Query: 75  LAGQEVKKGEVLARLNP--DEYALLEQQASANFQLADVQFQRAQRLRQDKVVSEQDFDQA 132
            +G  VK GE L +LN   ++  LL  +A A  +LA+   QRA+ L +++   +   DQ 
Sbjct: 111 ESGARVKAGEPLVQLNDATEQADLLAFRAQA--KLAENNLQRARNLLRNQAGPQVTVDQN 168

Query: 133 QANHNSAKATWEQAKANLRYTQLIAPYDGTISLIPAEQYEYVAAKQGVMNIQTNQLLKVQ 192
           QA  + A A  ++ +A +    + AP+DG + +      EYV+A   V+ +     L V 
Sbjct: 169 QAQLDEANANIKKTEALIAQKLIRAPFDGELGIRQVNVGEYVSAGGPVVTLTDLSNLFVD 228

Query: 193 FLLPDHLLNRFSRDGVEAHMVFDSFPNRQYPLQFQEIDTEADSKTRSYKVTMVMERPNDV 252
           F LP+  L++  R      +  D+ P   +      I+ +    TR+ KV   ++ P + 
Sbjct: 229 FTLPEQALSQI-RIRQPVLISADAAPGATFDAVISTIEPQVSPDTRAIKVRATLQNP-ER 286

Query: 253 GILPGMAGRVSLM-APSGSATVIPTSALFAEQGGKYVWRV--------DDAGLVSKAAVT 303
            +LPGM   + ++  P+ +  VIP +A+     G  V+ V         D  + ++  V 
Sbjct: 287 KLLPGMFANIRVVQPPAANRIVIPETAVDYTVYGDSVFVVAAQKDGEGKDGHVANRVPVK 346

Query: 304 LNE----QRQVLTGLNDGDRIIISGVSGVTEGIKV 334
             +    + ++L G+  GDR++ SG   +  G  V
Sbjct: 347 TGDRFDGKVEILDGVKPGDRVVSSGQLKLNNGAAV 381