Pairwise Alignments

Query, 343 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 411 a.a., Probable Co/Zn/Cd efflux system membrane fusion protein from Acidovorax sp. GW101-3H11

 Score =  105 bits (263), Expect = 2e-27
 Identities = 97/344 (28%), Positives = 159/344 (46%), Gaps = 26/344 (7%)

Query: 12  STLLVGCGKELPPVPEPDSRPAKLTTVSVGNNTFSRQFPATTAAGDRAVLAFRVPGQLQT 71
           ++LL  C +  PP  E   R  KL TV VG    S ++     A   + L FRV G++  
Sbjct: 43  ASLLAACSRPAPP--EEPVRSVKLLTVGVGALQSSLEYSGEVRARVESRLGFRVAGKIVK 100

Query: 72  IDVLAGQEVKKGEVLARLNPDEYALL-----EQQASANFQ--LADVQFQRAQRLRQDKVV 124
                GQ VK G+VLA+L+P +Y L       Q ASA  Q  LA    +R Q L+    +
Sbjct: 101 RQAELGQHVKAGQVLAQLDPKDYQLATDAARAQLASATTQRDLAAADLKRYQTLKDQNFI 160

Query: 125 SEQDFDQAQANHNSAKATWEQAKANL-------RYTQLIAPYDGTISLIPAEQYEYVAAK 177
           S  + ++ +A   +A+AT +QA+A L        YT L+A   G ++ I AE  + VAA 
Sbjct: 161 SGAELERREATLKAAQATLDQARAQLSSQGNQAAYTTLVADVSGVVTGIDAEPGQVVAAG 220

Query: 178 QGVMNIQTNQLLKVQFLLPDHLLNRFSRDGVEAHMVFDSFP-NRQYPLQFQEIDTEADSK 236
             V+ I  +    V F++P+   ++ ++  V + +    +          +E+   AD+ 
Sbjct: 221 TPVVRIAQDGPRDVVFVVPE---DKVAQMAVGSEVAVRGWSGGATLAGAVREVAASADAA 277

Query: 237 TRSYKVTMVMERPNDVGILPGMAGRVSLMAPSG-SATVIPTSALFAEQGGKYVWRVDDAG 295
           TR+++V + ++      +   +      ++ +G  A  +PTSAL  E     VW  D A 
Sbjct: 278 TRTFQVKVAIDGAEAPALGATVYVTPKALSHAGIPAIKLPTSALRQEGQATAVWVYDPAS 337

Query: 296 LVSKA-----AVTLNEQRQVLTGLNDGDRIIISGVSGVTEGIKV 334
              K+     A     +  V  GL  G +++ +GV  ++ G KV
Sbjct: 338 STVKSQPVQIATADGNEAVVAAGLAPGMQVVATGVHVLSPGQKV 381