Pairwise Alignments

Query, 343 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 384 a.a., efflux protein from Sinorhizobium meliloti 1021

 Score =  108 bits (270), Expect = 2e-28
 Identities = 95/351 (27%), Positives = 157/351 (44%), Gaps = 24/351 (6%)

Query: 5   LLAFSICSTLLVGCGKELPPVPEPDSRPAKLTTVSVGNNTFSRQFPATTAAGDRAVLAFR 64
           LL   +   +L GC +E     E   RP K+  ++         +  +  A     L FR
Sbjct: 15  LLTAILLGAVLSGCSQEKVETKET-IRPVKVVEIAAAGEPRELHYSGSVRARTEMNLGFR 73

Query: 65  VPGQLQTIDVLAGQEVKKGEVLARLNPDEYALLEQQASANFQLADVQFQ-------RAQR 117
           V G++    V  G  VK G++LAR++  +Y L    A AN   A+ Q Q       RA++
Sbjct: 74  VGGKITERLVNIGDRVKPGDILARIDATDYRLAVTSAEANLLAAEKQVQTTALAKLRAEQ 133

Query: 118 LRQDKVVSEQD-------FDQAQANHNSAKATWEQAKANLRYTQLIAPYDGTISLIPAEQ 170
           L      S+         +DQA +  ++A ++  QAK  + YT L A  +G ++ + A+ 
Sbjct: 134 LFTKSFSSQAQLDQATLLYDQAVSTRDAAASSLSQAKNQVSYTDLKADQNGIVTAVNADI 193

Query: 171 YEYVAAKQGVMNIQTNQLLKVQFLLPDHLLNRFSRDGVEAHMVFDSFPNRQYPLQFQEID 230
            + V     V+ +  +   +V+  +P+  +  F + G    + F S          +E+ 
Sbjct: 194 GQVVGTGTPVVTVAVDGEKEVEIAVPEIDVTEF-KPGKPVGVRFWSNDMLVLDGHVREVS 252

Query: 231 TEADSKTRSYKVTMVMERPNDVGILPGMAGRVSLMAPSGSATV-IPTSALFAEQGGKYVW 289
             AD ++R++ V + +  PND  +L GM   V   A S +  V IP SAL  + G   VW
Sbjct: 253 GSADQRSRTFSVRVSL--PNDERVLLGMTATVEAAAASSAPLVSIPLSALSKKDGQNIVW 310

Query: 290 RVD-DAGLVSKAAVTL----NEQRQVLTGLNDGDRIIISGVSGVTEGIKVR 335
            VD D   V    + L    +   +V+ GL  GD ++ +G   + E +KVR
Sbjct: 311 IVDRDFSTVHARPIKLADFADNGVRVVDGLGAGDLVVAAGTQFMAEDLKVR 361