Pairwise Alignments

Query, 343 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 357 a.a., acriflavin resistance periplasmic protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  124 bits (311), Expect = 4e-33
 Identities = 91/340 (26%), Positives = 160/340 (47%), Gaps = 13/340 (3%)

Query: 6   LAFSICSTLLVGCGKELPPVPEPD--SRPAKLTTVSVGNNTFSRQFPATTAAGDRAVLAF 63
           L FS  +  L+GC +    V      SRPA + T+         QF     + +RA LAF
Sbjct: 11  LVFSALTIGLLGCEQAPVEVKATGDISRPAMIVTLQP-QGISQTQFTGVVRSAERAELAF 69

Query: 64  RVPGQLQTIDVLAGQEVKKGEVLARLNPDEYALLEQQASANFQLADVQFQRAQRL-RQDK 122
           +  G+L ++ V  G +V +G+ LA L+  E       A+  F+ A   F R  ++    +
Sbjct: 70  KQSGKLASMTVQEGDKVSRGQTLATLDDAELKTALNSANVEFKQAQTDFDRGNKIFSTSQ 129

Query: 123 VVSEQDFDQAQANHNSAKATWEQAKANLRYTQLIAPYDGTISLIPAEQYEYVAAKQGVMN 182
            +S  D DQ +   + A     +A+ +L    L AP+DGT++      +  V   Q V  
Sbjct: 130 AISRSDLDQLKVKRDLAANKVAKAQQDLANASLNAPFDGTVAQKLVNNFATVQPNQPVYV 189

Query: 183 IQTNQLLKVQFLLPDHLLNRFSRDGVEAHMVFDSFPNRQYPLQFQEIDTEADSKTRSYKV 242
           +     L+V   +P  L       G  A    +    +++ L ++    +AD  +++Y+V
Sbjct: 190 VHNPANLEVMINVPGKLFLE-PNAGQRAVAEIEGLAGQRFGLTYRYYAADADPVSQTYQV 248

Query: 243 TMVMERPNDVGILPGMAGRVSLMAPSGSAT---VIPTSALF-AEQGGKYVWRVDDAGLVS 298
            +  + P+   +LPGM+ +V  +  S +     ++P  A+  +  G ++VW V+    V+
Sbjct: 249 VLGFDDPSAANLLPGMSAKVYPVMDSAAQNQHLLVPVDAVVPSNTGSQFVWLVNADSSVA 308

Query: 299 KAAV----TLNEQRQVLTGLNDGDRIIISGVSGVTEGIKV 334
           K ++     L  Q QV  GL+ GD+I+++GV  + EG+KV
Sbjct: 309 KRSIRVGNILGNQIQVTEGLSPGDKIVVAGVHALAEGMKV 348