Pairwise Alignments

Query, 343 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 358 a.a., periplasmic linker protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  137 bits (346), Expect = 3e-37
 Identities = 95/342 (27%), Positives = 171/342 (50%), Gaps = 22/342 (6%)

Query: 14  LLVGCGKELPPVPEPDSRPAKLTTVSVGNNTFSRQFPATTAAGDRAVLAFRVPGQLQTID 73
           +L+G  ++ P +    +R A  T  S  N   +R F     A D   LAFRV G++  I 
Sbjct: 13  VLLGSCRQAPDIEHTPARVAVYTIPSTENQV-TRVFSGVARAQDLTALAFRVEGRIARIP 71

Query: 74  VLAGQEVKKGEVLARLNPDEYALLEQQASANFQLADVQFQRAQRLRQDKVVSEQDFDQAQ 133
           V  GQ VK G+VLA L  +++ +      A   +   Q +R++ L   +++++ ++DQ  
Sbjct: 72  VTKGQRVKAGDVLAVLEKNDFQIALNDRRARLDVTRKQAERSKTLVDQQLMAQAEYDQMN 131

Query: 134 ANHNSAKATWEQAKANLRYTQLIAPYDGTISLIPAEQYEYVAAKQGVMNIQTNQLLKVQF 193
           A +  A+A   QA+  L YT+L AP+DG I  +  + +E V     V+++   + ++V  
Sbjct: 132 AEYLVARAEARQAELMLEYTKLKAPFDGLIGDVFLKSFENVQPGTLVLSVHRTERIEVDV 191

Query: 194 LLPDHLL--NRFSRDGVEAH---MVFDSFPNRQYPLQFQEIDTEADSKTRSYKVTMVMER 248
            +PD L+  +R +  G +     + F++FP++ +     E++TE D ++ +Y  T+ +E 
Sbjct: 192 QVPDLLIAVSRRAETGQQKQGFDVAFEAFPDKSFIGHLLEVNTEKDPQSHTYVATVAVEL 251

Query: 249 PNDVGILPGMAGRVSLMAPSGSAT-----VIPTSALFAEQGGKY------VWRVDDA-GL 296
           P  V +L GM  +V++     + T     ++P SA+    G         VW  D A G 
Sbjct: 252 PEGVKVLEGMPAKVTVDLGKATYTYRREYLLPISAVVMRDGSDIDLQDAGVWLYDSATGT 311

Query: 297 VS----KAAVTLNEQRQVLTGLNDGDRIIISGVSGVTEGIKV 334
           V     +  V + +  +V+ GL DG +++  G S + +G +V
Sbjct: 312 VKFKPVRLGVIVGQSIEVVDGLADGQQVVTQGASRLVDGQQV 353