Pairwise Alignments

Query, 343 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 381 a.a., Secretion protein HlyD (NCBI) from Rhodospirillum rubrum S1H

 Score = 92.0 bits (227), Expect = 2e-23
 Identities = 81/311 (26%), Positives = 148/311 (47%), Gaps = 13/311 (4%)

Query: 30  SRPAKLTTVSVGN---NTFSRQFPA--TTAAGDRAVLAFRVPGQLQTIDVLAGQEVKKGE 84
           ++P  + TV+V +     +    PA  T  A +   +   V G ++TI   +GQ VKKG+
Sbjct: 37  NQPEPVITVTVEDARAEDWQDTIPAVGTLRAINGVTVGAAVAGIVETISFESGQRVKKGD 96

Query: 85  VLARLNPDEYALLEQQASANFQLADVQFQRAQRLRQDKVVSEQDFDQAQANHNSAKATWE 144
           +L RL+  E         A  +L+ +   RA+RL Q    +  + D A+A      AT  
Sbjct: 97  LLVRLDDGEERGELDAVRAQAELSRITAGRARRLVQSAAGTRANLDDAEAQLRVNLATIG 156

Query: 145 QAKANLRYTQLIAPYDGTISLIPAEQYEYVAAKQGVMNIQTNQLLKVQFLLPDHLLNRFS 204
           Q +A +    + AP+DG + +   +  EYV A Q ++++Q   ++   F +    L R +
Sbjct: 157 QLEARVAKKTVTAPFDGVLGVRAVDLGEYVTAGQTLVDLQDLSVILADFSVSQKDLGRVA 216

Query: 205 RDGVEAHMVFDSFPNRQYPLQFQEIDTEADSKTRSYKVTMVMERPNDVGILPGMAGRVS- 263
             G +  +  D++P R +    + I  + D+ T    V    + P D  + PGM  +++ 
Sbjct: 217 -VGAKLTLTTDAWPGRAFEGTIKAIAPKVDANTGMAVVEGRFDNP-DGALRPGMFAKLAV 274

Query: 264 LMAPSGSATVIPTSALFAEQGGKYVWRVDDAGLVSKAAVTLNEQRQVLTGLNDGDRIIIS 323
           L A   S   +P +A+     G  ++ + +AG   K  V   ++  V TG+  GDR++++
Sbjct: 275 LRAERQSVVTVPATAVTYSLHGDALYVLKEAGEDGKVRV---DRITVTTGVRRGDRVVVT 331

Query: 324 GVSGVTEGIKV 334
             +G++ G +V
Sbjct: 332 --AGLSAGQRV 340