Pairwise Alignments

Query, 343 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 354 a.a., Secretion protein HlyD (NCBI) from Rhodospirillum rubrum S1H

 Score = 94.7 bits (234), Expect = 3e-24
 Identities = 71/288 (24%), Positives = 133/288 (46%), Gaps = 9/288 (3%)

Query: 52  TTAAGDRAVLAFRVPGQLQTIDVLAGQEVKKGEVLARLNPDEYALLEQQASANFQLADVQ 111
           TT A     +     G++  +    G++V KG+VL RL+        ++A A        
Sbjct: 64  TTRAHQAIAVVPLASGRIVEMPFPPGRKVNKGDVLVRLDDAAQRADVEEAEATLTQVSRA 123

Query: 112 FQRAQRLRQDKVVSEQDFDQAQANHNSAKATWEQAKANLRYTQLIAPYDGTISLIPAEQY 171
            +RA+ LR+ + V++   D  Q+N  +A A  ++A  +L    + AP+ G +     +  
Sbjct: 124 LERARSLRRTQAVAQATVDDLQSNRAAAAARLDRAHKDLADRVIAAPFAGIVGFRELDVG 183

Query: 172 EYVAAKQGVMNIQTNQLLKVQFLLPDHLLNRFSRDGVEAHMVFDSFPNRQYPLQFQEIDT 231
             V+  + +  +     + V+F +P+    R  R G+       +FP R +      ID+
Sbjct: 184 ARVSEGERLTTLDDLSSVDVEFAVPEIHFGRL-RPGMAIEATSQAFPGRIFTGAIDRIDS 242

Query: 232 EADSKTRSYKVTMVMERPNDVGILP-GMAGRVSLMAPSGSATVIPTSALFAEQGGKYVWR 290
                +R+++V   +  PN  G+LP G+   VS++     A ++P  A+ AE GG  V+ 
Sbjct: 243 RIGEVSRAFRVRATL--PNPQGLLPSGLFLNVSIVIEERPALMVPEEAIQAEAGGSVVY- 299

Query: 291 VDDAGLVSKAAVTLNEQR----QVLTGLNDGDRIIISGVSGVTEGIKV 334
           V   G V +  + L ++     +V  GL +GD+++  G+  + +G  V
Sbjct: 300 VIQGGAVRRQPIVLGQRTGTAVEVRDGLAEGDQVVSRGIQRLRDGSPV 347