Pairwise Alignments

Query, 343 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 347 a.a., putative secretion protein from Phaeobacter inhibens DSM 17395

 Score =  109 bits (272), Expect = 1e-28
 Identities = 91/340 (26%), Positives = 156/340 (45%), Gaps = 20/340 (5%)

Query: 10  ICSTLLVGCGKELPPVPEPDSRPAKLTTVSVGNNTFSRQFPATTAAGDRAVLAFRVPGQL 69
           I + +LVG    +P +     +P KL     G     R+F    AA +   LAF+V GQ+
Sbjct: 11  IAALMLVG----VPALAADVLKPVKLMVTQSGAMPIHREFYGQVAAKETVDLAFQVGGQV 66

Query: 70  QTIDVLAGQEVKKGEVLARLNPDEYALLEQQASANFQLADVQFQRAQRLRQDKVVSEQDF 129
               V  G  V KG ++A L+ + + L   QA    + AD    R ++L     VS+   
Sbjct: 67  VKFPVTEGAFVPKGALVAELDLEPFELKLGQAQLQKEQADRTVTRLEKL--TGTVSQVSI 124

Query: 130 DQAQANHNSAKATWEQAKANLRYTQLIAPYDGTISLIPAEQYEYVAAKQGVMNIQTNQLL 189
           D A+     ++     A   L +  L AP+D  +S      +  V+A   V+ +     L
Sbjct: 125 DDAETQAGLSRIALRDADYALEHATLNAPFDALVSSREVALFSTVSAGAPVVRLHDMSEL 184

Query: 190 KVQFLLPDHLLNRFSRDGVEAHMVFDSFP--NRQYPLQFQEIDTEADSKTRSYKVTMVME 247
            ++  +P+ L  +   +  +A  +  +FP  +  YPL+  E D EA S  ++Y+VT  ++
Sbjct: 185 HIEVDVPEVLFQQ--GEDNDALTITATFPGSDTAYPLEILEFDAEASSVGQTYRVTFRLD 242

Query: 248 RPNDVGILPGMAGRVSLMAPSG-SATVIPTSALFAEQGGK-----YVWRVDDAGLVS--- 298
            P D  I PG +  V +   +G SA V+P +A+     G+     +  +  D G V+   
Sbjct: 243 PPKDRQIFPGASTTVRVTVDTGASAIVVPPTAIVPAANGETGVMLFSPKGGDEGTVTWTK 302

Query: 299 -KAAVTLNEQRQVLTGLNDGDRIIISGVSGVTEGIKVREW 337
            + A T   Q ++ +GL  G+ I+++G   + +G  VR +
Sbjct: 303 VETAATDGGQIEITSGLQGGEEIVLTGGGALADGEAVRRF 342