Pairwise Alignments

Query, 343 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 417 a.a., RND family efflux transporter MFP subunit (RefSeq) from Shewanella loihica PV-4

 Score = 90.1 bits (222), Expect = 9e-23
 Identities = 70/287 (24%), Positives = 140/287 (48%), Gaps = 7/287 (2%)

Query: 55  AGDRAV-LAFRVPGQLQTIDVLAGQEVKKGEVLARLNPDEYALLEQQASANFQLADVQFQ 113
           A +R+V +A  V G++Q I++   Q V +G+VL  L   +      +A A       +  
Sbjct: 87  AANRSVQIAAEVSGKVQAINLSDNQAVSQGQVLVHLEDAKAKANLAEAKAYLNDERRKLG 146

Query: 114 RAQRLRQDKVVSEQDFDQAQANHNSAKATWEQAKANLRYTQLIAPYDGTISLIPAEQYEY 173
             +RL +   +++ + D   A+ + A+A  + A+A+L Y  L AP+DG I L+     + 
Sbjct: 147 EYKRLIKQHAITQTEIDAQLASVDIAEARLQAAQADLDYHTLKAPFDGVIGLVDFSLGKL 206

Query: 174 VAAKQGVMNIQTNQLLKVQFLLPDHLLNRFSRDGVEAHMVFDSFPNRQYPLQFQEIDTEA 233
           V+    ++++     +++   +P+  L++    G+       ++P  Q+  Q   +    
Sbjct: 207 VSVGSELVSLDDLSSMRLDLQIPERYLSQIYL-GMPVVASSSAWPGEQFHGQVVAMAPRI 265

Query: 234 DSKTRSYKVTMVMERPNDVGILPGMAGRVSLMAPSGSATVIPTSALFAEQGGKYVWRVDD 293
           +S+T + KV +  + P+ + + PGM     L     +  V+P  AL      ++V+ +D 
Sbjct: 266 NSETLNLKVRVNFDNPS-LQLRPGMLISARLDFAPVTQAVVPVQALEYSGTKRFVYVIDS 324

Query: 294 AGLVSKAAVTL----NEQRQVLTGLNDGDRIIISGVSGVTEGIKVRE 336
             +  +  VTL    ++Q  +  GL+ GDRI++ G+  + +GIKV +
Sbjct: 325 DNIARRTQVTLGARIDDQVLIDDGLSLGDRIVVKGLVNMRDGIKVED 371