Pairwise Alignments

Query, 343 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 385 a.a., RND family efflux transporter MFP subunit (RefSeq) from Shewanella loihica PV-4

 Score = 99.0 bits (245), Expect = 2e-25
 Identities = 91/354 (25%), Positives = 162/354 (45%), Gaps = 35/354 (9%)

Query: 14  LLVGCGKELPPVPEPDSRPAKLT-TVSVGNNTFSRQFPATTAAGDRAVLAFRVPGQLQTI 72
           LL  CGK   P P P   P+ +  T  V       +    T A +  V+  ++ GQL   
Sbjct: 20  LLAACGKA--PAPGPAVMPSVIVNTAQVKEIRAKTEIVGRTRASEDVVIKSQIQGQLLKR 77

Query: 73  DVLAGQEVKKGEVLARLNPD--EYALLEQQAS-----ANFQLADVQFQRAQRLRQDKVVS 125
             + G ++  GE+L  ++P   E  L +QQA      A+  +A + ++R +RL  D ++S
Sbjct: 78  TFVEGDDIDAGELLFEIDPSTFEAELAQQQAVLKQAIASRDVAVMNWERGRRLLPDGMIS 137

Query: 126 EQDFDQ-------AQANHNSAKATWEQAKANLRYTQLIAPYDGTISLIPAEQYEYVAAKQ 178
            QD D+         A    A+A  + A+  L YT++ AP  G IS     Q + +  + 
Sbjct: 138 AQDMDELTSRKLTTAAGVVQAEAAVKAAELQLSYTKVYAPISGRISGAKVSQGDIITPQS 197

Query: 179 GVMNIQTNQLLKVQFLLPDHLL----NRFSRDGVEAHMVFDSFPNRQYP--LQFQE---- 228
            + ++   Q + V F + +  +      FS+       + D     + P    F E    
Sbjct: 198 ELASLVQLQPMWVNFQVAEKTIISAKQNFSKAAKHEVKISDIVIRLRLPNGTMFDETGYI 257

Query: 229 --IDTEADSKTRSYKVTMVMERPNDVGILPGMAGRVSLMAP-SGSATVIPTSALFAEQGG 285
             I    D+ T + ++       + + +LPG+   + + +P S  A +IP +A+  +Q G
Sbjct: 258 DFISNRVDAATGTLELRATFNNESKL-MLPGLFVTLVIESPISEQAILIPQAAVQEDQQG 316

Query: 286 KYVWRVDDAGLVSKAAVTLNEQR----QVLTGLNDGDRIIISGVSGVTEGIKVR 335
           ++V  +D    V K  V L ++     +VL+GLN+G+RI++ G+  +  GI+V+
Sbjct: 317 RFVMVLDGDNKVQKRVVELGDRFGVDWRVLSGLNEGERIVVDGLQKIRPGIEVK 370