Pairwise Alignments

Query, 343 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 360 a.a., RND family efflux transporter MFP subunit (RefSeq) from Shewanella loihica PV-4

 Score =  162 bits (411), Expect = 9e-45
 Identities = 110/355 (30%), Positives = 183/355 (51%), Gaps = 15/355 (4%)

Query: 4   TLLAFSICSTLLVGCGKELPPVPEPDSRPAKLTTVSVGNNTFSRQFPATTAAGDRAVLAF 63
           T L+  + + +L GC  E   +     RP KL  ++   +   R FPA  AA  +A L+F
Sbjct: 6   TSLSLLVLTLVLAGCSTESAEIAPESVRPVKLLEITELGSGTLRSFPAKVAATKQAELSF 65

Query: 64  RVPGQLQTIDVLAGQEVKKGEVLARLNPDEYALLEQQASANFQLADVQFQRAQRLRQDKV 123
           R+ GQL    ++ GQ V KGEVLARL+  +         A+ +LA   F R   L +  +
Sbjct: 66  RLSGQLIEFSLVDGQRVTKGEVLARLDDRDARNQLLNREADHELAQADFNRKGELLRQAL 125

Query: 124 VSEQDFDQAQANHNSAKATWEQAKANLRYTQLIAPYDGTISLIPAEQYEYVAAKQGVMNI 183
           +S+ ++D A+A   S+ A    A+  L YT + AP+ GT++    E ++ V A Q V+ +
Sbjct: 126 ISQAEYDLAKAQLKSSAANLASAQDQLSYTVIKAPFSGTVAKTKIENFQIVQANQPVLVL 185

Query: 184 QTNQLLKVQFLLPDHLLNR---FSRDGVEAHMV-FDSFPNRQYPLQFQEIDTEADSKTRS 239
           Q ++ + V   +P+ L +R   F+       MV F + P +QY  + +E  T+    T+S
Sbjct: 186 QKDRFIDVVIQVPESLASRVTSFNPHSPSLPMVTFSNHPEQQYAARLKEFATQVTPGTQS 245

Query: 240 YKVTMVMERPNDVGILPGMAGRVSL-----MAPSGSATVIPTSALFAEQGGK-YVWRVD- 292
           Y+V   +  P +  +LPGM+ ++ L      A   SA V P++ L  +Q G+  VW  D 
Sbjct: 246 YEVVFTLPTPTEFSVLPGMSAQLILDIAGPDAKKKSAIVPPSAVLKRDQDGEPIVWTYDL 305

Query: 293 DAGLVSKAAVTL----NEQRQVLTGLNDGDRIIISGVSGVTEGIKVREWVKERGL 343
             G VS   V+L    ++  ++  GL  GDR++++GV+ + E  +V+    +RG+
Sbjct: 306 GTGQVSARKVSLGKVTSQGIEITQGLTVGDRVVVAGVAQLHESQQVKPLRWQRGV 360