Pairwise Alignments

Query, 343 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 359 a.a., RND family efflux transporter, MFP subunit from Dechlorosoma suillum PS

 Score = 91.7 bits (226), Expect = 3e-23
 Identities = 90/340 (26%), Positives = 154/340 (45%), Gaps = 19/340 (5%)

Query: 1   MNKTLLAFSICSTLLVGCGKELPPVPEPDSRPAKLTTVSVGNNTFSRQFPA--TTAAGDR 58
           MN + L    C +L +     +  V   ++ P++L T  V     +   PA     A  +
Sbjct: 16  MNTSSLFLRRCLSLALSLA--VGSVVAAEASPSELPTRVVQPREVALTLPAEGVVEALSQ 73

Query: 59  AVLAFRVPGQLQTIDVLAGQEVKKGEVLARLNPDEYALLEQQASANFQLADVQFQRAQRL 118
           AV+A +V G++  + V AGQ VKKGEV+ RL+  E A     A A    A  Q++R++ L
Sbjct: 74  AVVAAQVAGRVTEMRVDAGQAVKKGEVMLRLDVREAAETAAGAQAALVNARAQYERSRSL 133

Query: 119 RQDKVVSEQDFDQAQANHNSAKATWEQAKANLRYTQLIAPYDGTISLIPAEQYEYVAAKQ 178
           RQ   +S+   D+A+A+ + A A    + A+  +  + AP  G ++    E  E  A  +
Sbjct: 134 RQQNFISQSALDKAKADLDLAMANAGASGASQSHGTITAPISGLVARRHIELGEMAAQGR 193

Query: 179 GVMNIQTNQLLKVQFLLPDHLLNRFSRDGVEAHMVFDSFPNRQYPLQFQEIDTEADSKTR 238
            ++ +     L+V   +P + L    + G +     + FP  Q  +   ++     +   
Sbjct: 194 SLVTLYDPAGLRVTVEIPQYRLKEL-KGGKDLQGRIE-FPELQRQVAAAKVTVLPAADAA 251

Query: 239 SYKVTMVMERPNDVG----ILPGMAGRVSLMAPSGSATVIPTSALF--AEQGGKYVWRVD 292
           ++ V + +  P D      +LPGMA RV  +        +P SA+    E  G YV   D
Sbjct: 252 THTVQVRLNLPGDAASLQDVLPGMAARVHFVLGRAVKLTVPASAVVRRGEVAGLYV--RD 309

Query: 293 DAGLVSKAAVTLNE-----QRQVLTGLNDGDRIIISGVSG 327
             G +S   + L +     + +VL GL+ G+ I++  V G
Sbjct: 310 GQGRLSLRQLRLGQAVGDGEVEVLAGLSAGETIVLDPVRG 349