Pairwise Alignments

Query, 343 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 384 a.a., RND family efflux transporter, MFP subunit from Dechlorosoma suillum PS

 Score =  120 bits (301), Expect = 6e-32
 Identities = 102/355 (28%), Positives = 173/355 (48%), Gaps = 28/355 (7%)

Query: 3   KTLLAFSICST---LLVGCGKELPPVPEPDSRPAKLTTVSVGNNTFSRQFPATTAAGDRA 59
           KT+ +F++ +    +L  CGKE P  PEP  RPA LT V          +     A    
Sbjct: 2   KTIPSFALLAATAMVLASCGKEAPKAPEP--RPA-LTQVVGAAGQSDMLWVGEVRARYET 58

Query: 60  VLAFRVPGQLQTIDVLAGQEVKKGEVLARLNPDEYALLE-------QQASANFQLADVQF 112
              FR+ G++    V  G  VKKG++LARL+P +  L         + A A+F +A  ++
Sbjct: 59  DQGFRIGGKVVERKVDIGAVVKKGQILARLDPVDAGLSAAAANAQTKAAEADFLVAKAEY 118

Query: 113 QRAQRLRQDKVVSEQDFDQAQANHNSAKATWEQAKANLR-------YTQLIAPYDGTISL 165
           +R ++L + + +S+  FD  +A   +A A  +QA+A          YT L+A  DG ++ 
Sbjct: 119 ERQKKLLEKQFISQSAFDSREAQFKAALARLDQARAQAAVTGNQAGYTDLVAEKDGVVTD 178

Query: 166 IPAEQYEYVAAKQGVMNIQTNQLLKVQFLLPDHLLNRFSRDGVEAHMVFDSFPNRQYPLQ 225
           +  E  + V+A Q  + +      +V   +P+  +      G  A +   +  ++ Y  +
Sbjct: 179 VKVEPGQVVSAGQPAIRLALAGDKEVVVAVPEGRMKGI-EPGTSAVIRLWANQDQSYAAR 237

Query: 226 FQEIDTEADSKTRSYKVTMVMERPNDVGILPGMAGRVSLMAPSGSATVIPTSALFAEQGG 285
            +E+   AD+ TRS++V + +  P D G+  GM   V L+  + +  ++PT+AL  + G 
Sbjct: 238 VREVAPAADAATRSFQVKVTVLEP-DAGLRLGMTAGV-LIGSAEAPLLVPTAALTRQDGK 295

Query: 286 KYVWRVD-DAGLVSKAAVTLNEQRQ----VLTGLNDGDRIIISGVSGVTEGIKVR 335
             VW V+  +G V   +VT    R+    V  GL  G+R++I+GV  +  G  VR
Sbjct: 296 NTVWVVNPQSGEVQPRSVTTGPFREDGVVVEKGLARGERVVIAGVHKLQPGQLVR 350