Pairwise Alignments

Query, 343 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 369 a.a., HlyD family secretion protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  110 bits (276), Expect = 4e-29
 Identities = 84/348 (24%), Positives = 168/348 (48%), Gaps = 14/348 (4%)

Query: 1   MNKTLLAFSICSTLLVGCG-KELPPVPEPDSRPAKLTTVSVGNNTFSRQFPATTA----- 54
           M KT++A ++ +T+       ++    +P+S P  + TV V          A +      
Sbjct: 1   MKKTIIAIALIATVATAVSFSDVLQAAKPESAPQPMRTVPVVTGEVVEHPLAQSVSLIGK 60

Query: 55  -AGDRAV-LAFRVPGQLQTIDVLAGQEVKKGEVLARLNPDEYALLEQQASANFQLADVQF 112
            A DRAV +A +V G+++ I V++ Q VKKG++L  L+  +      +A+A       + 
Sbjct: 61  LAADRAVVIAPQVTGKIKQIAVVSNQAVKKGQLLIELDDMKAQAAVAEANAFLNDETRKL 120

Query: 113 QRAQRLRQDKVVSEQDFDQAQANHNSAKATWEQAKANLRYTQLIAPYDGTISLIPAEQYE 172
           +  ++L     +++ + D  +A+ + A+A    A+A+L Y  LIAP+ G   LI   + +
Sbjct: 121 KEFEKLISRNAITQTEIDAQKASVDIARARLASAQADLHYHSLIAPFAGQTGLINFSEGK 180

Query: 173 YVAAKQGVMNIQTNQLLKVQFLLPDHLLNRFSRDGVEAHMVFDSFPNRQYPLQFQEIDTE 232
            V+    +M +     +++   +P+H L++ S  G+       ++P   +  +   ID  
Sbjct: 181 MVSTGNELMTLDDLSSMRLDLQVPEHFLSQIS-IGMPVSSTSRAWPGETFIGKVVAIDPR 239

Query: 233 ADSKTRSYKVTMVMERPNDVGILPGMAGRVSLMAPSGSATVIPTSALFAEQGGKYVWRVD 292
            + +T + K+ +  E   D  + PGM    ++  P  SA ++P  AL      +YV+ V 
Sbjct: 240 VNEETLNLKIRVQFEN-TDNRLKPGMMMSSTITFPPISAPIVPVQALEYSGTKRYVYVVG 298

Query: 293 DAGLVSKAAVTL----NEQRQVLTGLNDGDRIIISGVSGVTEGIKVRE 336
           +  +  +  V L     +Q  + +GL  GD++++ G+  + +G+K+ E
Sbjct: 299 EDHIAHRTEVILGARVGDQVLIDSGLKIGDKVVVQGLVNMRDGLKINE 346