Pairwise Alignments

Query, 343 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 389 a.a., efflux transporter, RND family, MFP subunit (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score = 93.2 bits (230), Expect = 1e-23
 Identities = 95/359 (26%), Positives = 155/359 (43%), Gaps = 43/359 (11%)

Query: 12  STLLVGCGKELPPVPEPDSRPAKLTTVS--VGNNTFSRQFPATTAAGDRAVLAFRVPGQL 69
           +T + GC      VP P   P K+T  +  VG  T   +F  T AA +   +  RV G L
Sbjct: 21  ATGIYGCDSRNAYVPPP---PPKVTVGAPHVGPVTEYMEFSGTIAAVESVDITARVTGTL 77

Query: 70  QTIDVLAGQEVKKGEVLARLNPDEYALLEQQASANFQL-------ADVQFQRAQRLRQDK 122
           ++     G  V KG+ L  + P+ Y    Q+A A  ++       A+ +  R+++L  +K
Sbjct: 78  RSAQFRDGSTVHKGDPLFIIEPEPYQAALQRAEAELEVQQAALARAETELARSRKLLTEK 137

Query: 123 VVSEQDF-------DQAQANHNSAKATWEQAKANLRYTQLIAPYDGTISLIPAEQYEYV- 174
             SE D        D A+AN + AKA  E A+ +L YT++ AP+DG IS   A+    V 
Sbjct: 138 AGSETDVVKWQQQRDSAKANISRAKAQIETARIDLGYTRITAPFDGQISRRFADPGNVVG 197

Query: 175 -AAKQGVMNIQTNQLLKVQFLLPDHLLNRFSRDGVEAHMVF-------------DSFPNR 220
             A   +  I     + V F + +  L R   +  +                  D FP+ 
Sbjct: 198 PGAVTRLATIVRRDQVHVYFNINERDLLRLMAERPKPKTASAPTMPLELALADEDGFPHA 257

Query: 221 QYPLQFQEIDTEADSKTRSYKVTMVMERPNDVGILPGMAGRVSL-MAPSGSATVIPTSAL 279
               +    D   D  T + ++  +   P+   +LPG+  R+ + +  S  A ++P  A+
Sbjct: 258 G---KLDYADPGVDPATGTMQLRGLFPNPSG-RLLPGLFARIRVAVGQSDKAMMVPDRAI 313

Query: 280 FAEQGGKYVWRVDDAGLVSKAAVTLNE----QRQVLTGLNDGDRIIISGVSGVTEGIKV 334
             +Q G YV  V+   +  + AV L       R V  GL+  DR++++G+     G  V
Sbjct: 314 GQDQSGSYVIIVNAQNIAEQRAVVLGPLHEGYRVVSKGLSAEDRVVVNGIQRARPGSPV 372