Pairwise Alignments

Query, 343 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 398 a.a., RND transporter MFP subunit from Cupriavidus basilensis FW507-4G11

 Score =  117 bits (292), Expect = 7e-31
 Identities = 105/346 (30%), Positives = 153/346 (44%), Gaps = 24/346 (6%)

Query: 10  ICSTLLVGCGKELPPVPEPDSRPAKLTTVSVGNNTFSRQFPATTAAGDRAVLAFRVPGQL 69
           +    L GC +E    PE   RP +L  +  G      +F         + L FRV G++
Sbjct: 44  LAGVALAGCSREAEKAPE--IRPVRLMQLQPGVGKTEVEFSGDVRPRIESRLGFRVGGKI 101

Query: 70  QTIDVLAGQEVKKGEVLARLNPDEYALLEQQASANF-------QLADVQFQRAQRLRQDK 122
               V  G  V++G+ LARL+P +  L E  + A +        LA+   +R   L   K
Sbjct: 102 AARLVDVGATVRRGQPLARLDPTDLGLAEAGSRAQYDAAKTDRDLAEADLKRYNELFAKK 161

Query: 123 VVSEQDFDQAQANHNSAKATWEQAKANLR-------YTQLIAPYDGTISLIPAEQYEYVA 175
            +S  +  + QA  +SA +   QA+A LR       Y  L A  DG ++LI AE  + VA
Sbjct: 162 FISAAEQQRRQATFDSAASRLRQAEAGLRNQSNQTAYGVLAADADGVVTLIEAEVGQVVA 221

Query: 176 AKQGVMNIQTNQLLKVQFLLPDHLLNRFSRDGVEAHMVFDSFPNRQYPLQFQEIDTEADS 235
           A Q V+ +      +V   LP+  + R  R   +  +   + P R  P   +EI   AD 
Sbjct: 222 AGQSVVRVAQTAEKEVAVGLPEDQVERL-RGISDVTVRTWAEPGRALPGHVREISPMADP 280

Query: 236 KTRSYKVTMVMERPNDVGILPGMAGRVSLMAPSGSATV-IPTSALFAEQGGKYVWRVDDA 294
            TR+Y   + +  P       GM   V+    S  A + +P SAL  +QG   VW  D A
Sbjct: 281 VTRTYAARISVPNP-PADFKFGMTAVVTFTRTSDDAALRVPLSALLQKQGSNQVWVYDAA 339

Query: 295 -GLVSKAAVTLNE----QRQVLTGLNDGDRIIISGVSGVTEGIKVR 335
            G V    VTL E    + QV  GL+ G  I+ +GV  +  G KV+
Sbjct: 340 TGAVQPVNVTLGELQGNEIQVRQGLSPGQTIVTAGVHLLKPGQKVK 385