Pairwise Alignments

Query, 343 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 389 a.a., RND family efflux transporter, MFP subunit from Paraburkholderia bryophila 376MFSha3.1

 Score =  113 bits (283), Expect = 7e-30
 Identities = 100/352 (28%), Positives = 164/352 (46%), Gaps = 36/352 (10%)

Query: 15  LVGCGKELPPVPEPDSRPAKLTTVSVGNNTFS-RQFPATTAAGDRAVLAFRVPGQLQTID 73
           L  C K+    PEP  RP     V V  NT      P    A     L+FRV G++    
Sbjct: 31  LNACSKKEAGAPEP--RPVVAVAVHVDGNTAPVTSLPGEVQARYSTPLSFRVGGKIVERR 88

Query: 74  VLAGQEVKKGEVLARLNPDEYALLEQQASA-------NFQLADVQFQRAQRLRQDKVVSE 126
           V  G  V+ G+V+ARL+P +       A A       +++ A  Q  R Q   ++ +++ 
Sbjct: 89  VRLGDVVRNGQVVARLDPADAQKNAASAQAQLAAAEHSYKYAKQQLDRDQAQAKENLIAP 148

Query: 127 QDFDQAQANHNSAKATWEQA-------KANLRYTQLIAPYDGTISLIPAEQYEYVAAKQG 179
              +Q    + SA A  +QA       K  L+YT L+A + G I+   A+  + V+A Q 
Sbjct: 149 AQLEQTTNAYASAAAQRDQAAQQAALSKDQLQYTTLVADHAGVITAEQADTGQNVSAGQA 208

Query: 180 VMNIQTNQLLKVQFLLPDHLLNRFSRDGVEAHMVFDSFPNRQYPLQFQEIDTEADSKTRS 239
           V N+  +  + V   +P+  L   +  G  A++   + P R++  + +E+   AD ++R+
Sbjct: 209 VYNLAWSGEVDVVCDVPESALAGLAL-GQTANVTLGALPGRKFTARVRELSPAADPQSRT 267

Query: 240 YKVTMVMERPN-DVGILPGMAGRVSLMAPSGSAT----------VIPTSALFAEQGGKYV 288
           Y+  + ++ P  DV +  GM   ++L AP+ S+           V+P +ALF +     V
Sbjct: 268 YRAKLTLDNPGPDVRL--GMTADIALSAPAPSSASGAQGQHGFIVLPATALFHDGAQPAV 325

Query: 289 WRVDDAG----LVSKAAVTLNEQRQVLT-GLNDGDRIIISGVSGVTEGIKVR 335
           W V  A     L     V  NE+  V++ GL DG+ +++ GV  V+ G KVR
Sbjct: 326 WVVRAADSMLELRRVTVVRYNERTIVISQGLKDGEHVVLQGVHTVSAGEKVR 377