Pairwise Alignments

Query, 343 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 356 a.a., transmembrane protein precursor, possibly involved in transport (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  103 bits (256), Expect = 9e-27
 Identities = 92/341 (26%), Positives = 154/341 (45%), Gaps = 18/341 (5%)

Query: 6   LAFSICSTLLVGCGKELPPVPEPDSRPA-KLTTVSVGNNTFSRQFPATTAAGDRAVLAFR 64
           L   I   LL  C +        DS+P  K+ TV       + QFP    A     L+FR
Sbjct: 7   LLTGILVVLLASCSQRTQIT---DSKPTVKIDTVLSAGGQTALQFPGRVKAAQDISLSFR 63

Query: 65  VPGQLQTIDVLAGQEVKKGEVLARLNPDEYALLEQQASANFQLADVQFQRAQRLRQDKVV 124
           V G +  + V  G  V+KG++LA L+P +Y +    A A +Q    + +R   L ++ V 
Sbjct: 64  VSGTILRMYVNDGTYVRKGQLLAELDPADYQIQLDAAEAEYQSVKAEAERVMALYKENVT 123

Query: 125 SEQDFDQAQANHNSAKATWEQAKANLRYTQLIAPYDGTISLIPAEQYEYVAAKQGVMNIQ 184
           +    D+A        A +  AK  L YT+L AP+ G +     + +E +AA   V++I 
Sbjct: 124 TPDANDKAMYGLKQITAKYNHAKDQLEYTRLYAPFSGYVQKRLFDSHETIAAGMPVVSII 183

Query: 185 TNQLLKVQFLLPD-HLLNRFSRDGVEAHMVFDSFPNRQYPLQFQEIDTEADSKTRSYKVT 243
           +    +V+  LP    + R    G      FD +P ++Y L    +  +A++  + Y + 
Sbjct: 184 SEGTPEVEINLPAVEYIRRQQFTGYTC--TFDIYPGQEYALDLINVTPKANA-NQLYTMR 240

Query: 244 MVMERPNDVGI-LPGMAGRVSLMAPSGSA--TVIPTSALFAEQGGKYVWRVD-DAGLVSK 299
           + +++     +  PGM   V++    G      +PT A+  ++G   V+  D  +  + +
Sbjct: 241 LQLKKGEAQALPSPGMNTMVTIECTEGEVRHLSVPTGAVLRDKGMASVFLYDASSRTIRR 300

Query: 300 AAVT----LNEQRQVLT--GLNDGDRIIISGVSGVTEGIKV 334
             VT    L   R ++T  GL  GD I+ SGV  V +G +V
Sbjct: 301 CDVTVTRLLGSGRCLVTAEGLKPGDLIVASGVHHVKDGEQV 341