Pairwise Alignments

Query, 343 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 356 a.a., component of multidrug efflux system (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  124 bits (310), Expect = 5e-33
 Identities = 96/344 (27%), Positives = 169/344 (49%), Gaps = 18/344 (5%)

Query: 2   NKTLLAFSICSTLLVGCGKELPPVPEPDSRPAKLTTVSVGNNTFSRQFPATTAAGDRAVL 61
           N +L  F +C  LL  CGK      EP     K+    +   +  R+F           L
Sbjct: 5   NFSLCIFCLC--LLTSCGKGEKKTNEPVR--VKVAEAEMLVPSAEREFSFIAKPFKETEL 60

Query: 62  AFRVPGQLQTIDVLAGQEVKKGEVLARLNPDEYALLEQQASANFQLADVQFQRAQRLRQD 121
           +FRV G +   +V AG    +G+++A ++  ++ + +++A A +  A  +F+R + L + 
Sbjct: 61  SFRVGGPIDHFEVYAGNYYHRGDIIAEIDSRDFRIRKERAEAIYHQAKAEFERIKVLYEK 120

Query: 122 KVVSEQDFDQAQANHNSAKATWEQAKANLRYTQLIAPYDGTISLIPAEQYEYVAAKQGVM 181
             +S   +++A+A++ SAK  +E A   L  T+LIAP+DG I  +  E+Y+ V A Q V+
Sbjct: 121 NNLSASAYEKARADYTSAKTAYETAVNELEDTKLIAPFDGYIGEVYIEKYQDVKATQSVV 180

Query: 182 NIQTNQLLKVQFLLPDHLLNRFSRDGVEAHMVFDSFPNRQYPLQFQEIDTEADSKTRSYK 241
           +      LK++  +   +  + +++  E  + FD  P   YP +  E+         S+ 
Sbjct: 181 SFIDITQLKIEAYVTQEIAFQ-AKEIKEVGIRFDVRPEAVYPAKVVEVSKSTTRNNLSFL 239

Query: 242 VTMVMERPNDVGILP-GMAGRVSLMAPSGSA----TVIPTSALFAEQGGKYVWRVDD-AG 295
           +T ++  PN  G  P G++G++ L  P+ S+    TV  T+       G YVW VD   G
Sbjct: 240 MTALL--PNKQGEWPAGISGKMLLDLPATSSVPMVTVPQTALNHRPTEGDYVWMVDQTTG 297

Query: 296 LVSKAAVTLNE-----QRQVLTGLNDGDRIIISGVSGVTEGIKV 334
            V K  V L E     + +V  GL  GD++ +S +  +++G+ V
Sbjct: 298 QVVKRKVILGELLPNGKVEVKDGLQAGDKVAVSKLRFLSDGMPV 341