Pairwise Alignments

Query, 343 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 365 a.a., putative cation efflux pump (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 82.4 bits (202), Expect = 2e-20
 Identities = 87/370 (23%), Positives = 151/370 (40%), Gaps = 62/370 (16%)

Query: 13  TLLVGCGKELPPVPEPDSRPAKLTTVS---VGNNTFSRQFPATTAAGDRAVLAFRVPGQL 69
           ++L GC KE          P    +V+   V + T ++ +P          L  RV G L
Sbjct: 8   SVLTGC-KEKKDTGAMKGMPTLAISVAKPIVKDITLTKDYPGYLTTEKTVNLVARVNGTL 66

Query: 70  QTIDVLAGQEVKKGEVLARLNPDEYALLEQQASANFQLADVQFQRAQR--------LRQD 121
           Q++    G  VKKG++L  + P  Y     QA A  + A  Q + A+         ++ D
Sbjct: 67  QSVSYAPGGRVKKGQLLFVIEPTLYNDKVAQAEAELKTAQAQLEYARNNYSRMKEAVKSD 126

Query: 122 KVV------SEQDFDQAQANHNSAKATWEQAKANLRYTQLIAPYDGTISLIPAEQYEYVA 175
            V       SE    +  A  ++A+A    A+ NL Y  + AP+DGTIS    +   YV 
Sbjct: 127 AVSQIQVLQSESSVTEGVAAVSNAEAALSTARTNLGYCYVRAPFDGTISKSTVDIGSYVG 186

Query: 176 AK---------------QGVMNIQTNQLLKVQFL-------LPDHLLNRFSRDGVEAHMV 213
                                N+  NQ L++          LP  ++ +  ++G E+   
Sbjct: 187 GSLQPVTLATIYKDDQMYAYFNVADNQWLEMSMNNQQPTKDLPKKIMVQLGKEGTES--- 243

Query: 214 FDSFPNRQYPLQFQEIDTEADSKTRSYKVTMVMERPNDVGILPGMAGRVSLMAPSGS--- 270
                   YP     +    D  T +  V    + P  V +  G+   VS+  P G    
Sbjct: 244 --------YPATLDYLSPNVDLNTGTLMVRANFDNPQGV-LKSGL--YVSITLPYGEADH 292

Query: 271 ATVIPTSALFAEQGGKYVWRVDDAGLVSKAAVTLNE-----QRQVLTGLNDGDRIIISGV 325
           A ++  +++  +Q GK+++ V+D+ +V    + + +      RQVL GL+  +R +   +
Sbjct: 293 AILVKEASIGTDQLGKFLYAVNDSDIVHYRHIEIGQLINDTLRQVLGGLSPQERYVTEAL 352

Query: 326 SGVTEGIKVR 335
             V +G+K++
Sbjct: 353 MKVRDGMKIK 362