Pairwise Alignments

Query, 343 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 361 a.a., RND family efflux transporter MFP subunit (RefSeq) from Shewanella sp. ANA-3

 Score =  138 bits (347), Expect = 2e-37
 Identities = 99/337 (29%), Positives = 164/337 (48%), Gaps = 16/337 (4%)

Query: 14  LLVGCGKELPPVPEPDSRPAKLTTVSVGNNTFSRQFPATTAAGDRAVLAFRVPGQLQTID 73
           LLVGC +      E  SRP KL  V    +T + ++P + ++   AVLAF VPG++  + 
Sbjct: 20  LLVGCEQSQIDTKETVSRPVKLLQVEQTPSTSTYRYPGSVSSVKEAVLAFEVPGKVIKLH 79

Query: 74  VLAGQEVKKGEVLARLNPDEYALLEQQASANFQLADVQFQRAQRLRQDKVVSEQDFDQAQ 133
           V  G  VK+  VLA ++  +Y      A ++  +A   FQR ++  +   V+ Q F QA+
Sbjct: 80  VKEGDFVKQDTVLAEIDDRDYQAQLDSAKSDLIVAKSDFQRYEKALKADAVTPQAFQQAK 139

Query: 134 ANHNSAKATWEQAKANLRYTQLIAPYDGTISLIPAEQYEYVAAKQGVMNIQTNQLLKVQF 193
            N   A+A + QA   L  T+LIAP+ G +     + +  V AKQ +M + +    ++  
Sbjct: 140 RNLEVAQAAFNQADKALTETKLIAPFAGRVVTREIDLFATVHAKQPIMQLHSESAYEMVV 199

Query: 194 LLPDHLLNRFSRDGVEAHMVFD--------SFPNRQYPLQFQEIDTEADSKTRSYKVTMV 245
            +P+    +  R    A +  D        +FP++++  +  E   +AD+ TR+YKV + 
Sbjct: 200 SVPESDWAQGERVNSAADIKLDNQLFVTLTAFPDKRFEGKITEFSGQADAATRTYKVKVA 259

Query: 246 MERPNDVGILPGMAGRVSLMAPSGSATV--IPTSALFA-EQGGKYVWRVDDA-GLVSKAA 301
              P+   I  GM G    ++ + S  +  IP  A+        +VW  D   G V+K +
Sbjct: 260 FSVPDKTPISSGMTGHAIYLSSNESTNILSIPLDAIVGNSDNSAFVWLYDPINGQVTKKS 319

Query: 302 VTL----NEQRQVLTGLNDGDRIIISGVSGVTEGIKV 334
           +T+     +   VL+GL  GD I +SGV  + +G  V
Sbjct: 320 ITIGNITEQTVNVLSGLKVGDVIAVSGVHSLYDGYPV 356