Pairwise Alignments

Query, 343 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 360 a.a., RND family efflux transporter MFP subunit (RefSeq) from Shewanella sp. ANA-3

 Score =  170 bits (431), Expect = 4e-47
 Identities = 110/350 (31%), Positives = 183/350 (52%), Gaps = 15/350 (4%)

Query: 9   SICSTLLVGCGKELPPVPEPDSRPAKLTTVSVGNNTFSRQFPATTAAGDRAVLAFRVPGQ 68
           ++   LL  C      V     RP KL  V        R FPA  +A  RA L+FR+ G+
Sbjct: 11  ALLPALLTACTPAESSVQASAIRPVKLFEVMQLEGGDFRTFPARVSANSRAELSFRISGE 70

Query: 69  LQTIDVLAGQEVKKGEVLARLNPDEYALLEQQASANFQLADVQFQRAQRLRQDKVVSEQD 128
           L  + ++ GQ++++G +LA+L+  +         A  +L    FQR   L + K++S+ +
Sbjct: 71  LTDLALVEGQQIRQGSLLAKLDDRDAYNNLMTREAEHELLAADFQRKTELLKRKLISQAE 130

Query: 129 FDQAQANHNSAKATWEQAKANLRYTQLIAPYDGTISLIPAEQYEYVAAKQGVMNIQTNQL 188
           FD AQA   SAKA    A+  L YT+LIAP+ GT++    + ++ V A QG++ +Q N L
Sbjct: 131 FDSAQAQLKSAKAALAAARDQLSYTKLIAPFSGTVAKRLVDNHQIVQANQGILTLQNNSL 190

Query: 189 LKVQFLLPD----HLLNRFSRDGVEAHMVFDSFPNRQYPLQFQEIDTEADSKTRSYKVTM 244
           L V   +P+     L N   +    A + F +    ++  +F+E  T+    T++Y+V  
Sbjct: 191 LDVSIQVPEAMAASLNNYIQQQNFTAKVRFSALAGMEFDAKFKEYSTQVTPGTQAYEVVF 250

Query: 245 VMERPNDVGILPGMAGRVSL---MAPSGSAT-VIPTSALFA--EQGGKYVWRVD-DAGLV 297
            + +P D+ +LPGM+  ++L     P  +A+ ++P +A+    + G   VW     +G V
Sbjct: 251 SLPQPKDIQLLPGMSAELTLALVKTPDQTASAIVPVTAIDKRDQDGQVQVWVYQAQSGEV 310

Query: 298 SKAAVTL----NEQRQVLTGLNDGDRIIISGVSGVTEGIKVREWVKERGL 343
              AVTL     E  +VL G+N GD I+ +GVS +++G+KV+    +RG+
Sbjct: 311 KPTAVTLGRVTTEGIEVLGGINKGDLIVSAGVSQLSDGMKVKPLRWQRGV 360