Pairwise Alignments

Query, 343 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 370 a.a., putative efflux protein (RefSeq) from Shewanella sp. ANA-3

 Score = 89.0 bits (219), Expect = 2e-22
 Identities = 89/340 (26%), Positives = 151/340 (44%), Gaps = 26/340 (7%)

Query: 14  LLVGCGKELPPVPEPDSRP-AKLTTVSVGNNTFSRQFPATTAAGDRAVLAFRVPGQLQTI 72
           +L GCG           RP  ++  +         +F     + +RA L+FRV G L  +
Sbjct: 22  VLAGCGSSEDQTLTTSKRPLVQVMELPAPVTDKGYKFSGVLESENRADLSFRVQGVLAEL 81

Query: 73  DVLAGQEVKKGEVLARLNPDEY--ALLE-----QQASANFQLADVQFQRAQRLRQDKVVS 125
               G EV KG+V+ARL+P ++  ++LE      +A    QLA ++ QR +    D+ ++
Sbjct: 82  LAEEGVEVTKGQVIARLDPHDFQVSVLELTAKLDEAKTAHQLAKIELQRVKSAINDRAIA 141

Query: 126 EQDFDQAQANHNSAKA-------TWEQAKANLRYTQLIAPYDGTISLIPAEQYEYVAAKQ 178
               D+A A    AKA       + ++A+  LRYT+L +PYDG +     +Q+E V    
Sbjct: 142 SVKLDRAVAAEARAKAGVELVSQSLKKAQDALRYTELTSPYDGVVGKTFVDQHEQVNVGT 201

Query: 179 GVMNIQTNQLLKVQFLLPDHLLNRFSRDGVEAHMVFDSFPNRQYPLQFQEIDTEADSKTR 238
            ++ I   + L     +P+  +    + G E  + +        P    +I +  D   R
Sbjct: 202 KILTIHRPERLNAVVDVPESQIWNL-KLGTEGQVTWFE-GTEAVPAVVAKIASVPDRLKR 259

Query: 239 SYKVTMVMER-PNDVGILPGMAGRVSLMAPSGS---ATVIPTSALFAEQGGKYVWRV--D 292
           +Y+VT  +   P    ++ G A  V +  P  S      IP  A+ + +   YV RV  +
Sbjct: 260 TYEVTFNLAHVPKQ--LVAGKAVSVDVALPYASDKPIYCIPAMAVTSRESQLYVNRVIAE 317

Query: 293 DAGLVSKAAVTLNEQRQVLT-GLNDGDRIIISGVSGVTEG 331
                   +V+  +    +T GL  G+ I+I+G + V EG
Sbjct: 318 HVSATPVESVSQTDDSLCVTGGLTSGESIVIAGGAFVEEG 357