Pairwise Alignments

Query, 343 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 360 a.a., RND family efflux transporter MFP subunit (RefSeq) from Shewanella sp. ANA-3

 Score = 86.3 bits (212), Expect = 1e-21
 Identities = 67/294 (22%), Positives = 134/294 (45%), Gaps = 6/294 (2%)

Query: 52  TTAAGDRAVLAFRVPGQLQTIDVLAGQEVKKGEVLARLNPDEYALLEQQASANFQLADVQ 111
           T  A +   +  +V   + ++    G  VKKG++L +L   E     + A         +
Sbjct: 56  TNKAFESVTITPKVTDVVTSLKFDDGDIVKKGDLLVQLQNAEQIAKVKVAQVKVSDNQRE 115

Query: 112 FQRAQRLRQDKVVSEQDFDQAQANHNSAKATWEQAKANLRYTQLIAPYDGTISLIPAEQY 171
             R   L   + V+E + D+ Q   ++ +A  EQA+++L    ++AP++G + L      
Sbjct: 116 LARISSLVTSRTVAELERDRLQTLIDTTRAELEQAQSSLNDRSIVAPFNGRLGLRQVSVG 175

Query: 172 EYVAAKQGVMNIQTNQLLKVQFLLPDHLLNRFSRDGVEAHMVFDSFPNRQYPLQFQEIDT 231
             V     +  +     +K+ F +P+  +    + G +      +FP+  +  +   ID+
Sbjct: 176 SLVTPGTEITTLDDISKIKLDFSVPERFIQDL-QPGKQVEAKAVAFPDEIFKGKVISIDS 234

Query: 232 EADSKTRSYKVTMVMERPNDVGILPGMAGRVSLMAPSGSATVIPTSALFAEQGGKYVWRV 291
             +  TR+  V   +  P D+ +LPGM  +V L+  S  A ++P SA+   Q   +V+ V
Sbjct: 235 RVNPTTRAVIVRAEIPNP-DLRLLPGMLMKVKLIKRSREALMLPESAIIPIQKEHFVYSV 293

Query: 292 DDAGLVSKAAVTLNEQR----QVLTGLNDGDRIIISGVSGVTEGIKVREWVKER 341
           +   ++ +  VT+  +     ++L GL  G+ ++I G+  V  G  V+  + E+
Sbjct: 294 NKDNVIERKQVTIGIRTRGWVEILGGLEIGENVVIRGLLKVHPGDVVKTELAEK 347