Pairwise Alignments

Query, 343 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 370 a.a., RND family efflux transporter MFP subunit (RefSeq) from Shewanella sp. ANA-3

 Score =  107 bits (267), Expect = 5e-28
 Identities = 85/352 (24%), Positives = 168/352 (47%), Gaps = 14/352 (3%)

Query: 1   MNKTLLAFSICSTLLVGCG-KELPPVPEPDSRPAKLTTVSVGNNTFSRQFPATTA----- 54
           M KT++A ++ + +       ++    +P+S P  + TV V          A +      
Sbjct: 1   MKKTIIAIALIAAVATAVSFSDVLQAAKPESAPHLMRTVPVVTGEVVEHPLAQSISLIGK 60

Query: 55  -AGDRAV-LAFRVPGQLQTIDVLAGQEVKKGEVLARLNPDEYALLEQQASANFQLADVQF 112
            A DRAV +A +V G+++ I V + Q VKKG++L  L+  +      +A+A       + 
Sbjct: 61  LAADRAVVIAPQVTGKIKQIAVTSNQAVKKGQLLIELDDMKAQAAVAEANAFLNDETRKL 120

Query: 113 QRAQRLRQDKVVSEQDFDQAQANHNSAKATWEQAKANLRYTQLIAPYDGTISLIPAEQYE 172
           +  ++L     +++ + D  +A+ + A+A    A+A+L Y  LIAP+ G   LI   + +
Sbjct: 121 REFEKLISRNAITQTEIDAQKASVDIARARLASAQADLHYHSLIAPFAGKTGLINFSEGK 180

Query: 173 YVAAKQGVMNIQTNQLLKVQFLLPDHLLNRFSRDGVEAHMVFDSFPNRQYPLQFQEIDTE 232
            V+    +M +     +++   +P+H L++ S  G+       ++P   +  +   ID  
Sbjct: 181 MVSIGTELMTLDDLSSMRLDLQVPEHFLSQLS-IGMPVSATSRAWPGETFIGKVVAIDPR 239

Query: 233 ADSKTRSYKVTMVMERPNDVGILPGMAGRVSLMAPSGSATVIPTSALFAEQGGKYVWRVD 292
            + +T + K+ +  E   +  + PGM    +L  P  SA ++P  AL      +YV+ V 
Sbjct: 240 VNEETLNLKIRVQFENAKN-RLKPGMMMSSTLTFPPISAPIVPVQALEYSGTKRYVYVVG 298

Query: 293 DAGLVSKAAVTL----NEQRQVLTGLNDGDRIIISGVSGVTEGIKVREWVKE 340
           +  +  +  V L     +Q  + +GL  GD++++ G+  + +G+K+ E V E
Sbjct: 299 EDHIAHRTEVILGARVGDQVLIDSGLKIGDKVVVQGLVNMRDGLKINEVVLE 350