Pairwise Alignments

Query, 343 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 372 a.a., RND family efflux transporter MFP subunit (RefSeq) from Shewanella sp. ANA-3

 Score = 84.7 bits (208), Expect = 3e-21
 Identities = 69/284 (24%), Positives = 132/284 (46%), Gaps = 22/284 (7%)

Query: 67  GQLQTIDVLAGQEVKKGEVLARLNPDEYALLEQQASANFQLADVQFQRAQRLRQDKVVSE 126
           G++ +I+   G  V+KG++LA L+        +        A+  F+R  +L   K VS+
Sbjct: 78  GRVTSINFENGSRVEKGQLLAELDAKVERANLKSKMVQLPAAEADFKRLSKLYAQKSVSK 137

Query: 127 QDFDQAQANHNSAKATWEQAKANLRYTQLIAPYDGTISLIPAEQYEYVAAKQGVMNIQTN 186
           QD D +++ + + +A  E  KA +   ++ AP+ G + +      EY+     ++ ++  
Sbjct: 138 QDLDNSESKYLALQADIESLKATIERREISAPFSGLVGIRNINLGEYLQPGTDIVRLEDI 197

Query: 187 QLLKVQFLLPDHLLNRFSRDGVEAHMVFDSFPNRQYPLQFQEIDTEADSKTRSYKVTMVM 246
             +K++F +P   L R +  G + H+  DS+P + +  +   I+     ++   +V   +
Sbjct: 198 STMKIRFTIPQTQLPRIA-VGQKIHVFVDSYPEQPFEGEIAAIEPAVFYQSGLIQVQARI 256

Query: 247 ERPND-VGILPGMAGRVSLMAPS-GSATVIPTSAL-------------FAEQGGKYVWRV 291
             PND   +  GM  RVS++ P   +  V+P +A+               E+ GK + RV
Sbjct: 257 --PNDNAKLRSGMFARVSILLPELDNQFVLPQTAINFTLYGNSIYLIKEVEENGKKLARV 314

Query: 292 DDAGLVSKAAVTLNEQRQVLTG-LNDGDRIIISGVSGVTEGIKV 334
           +   L     +  N    +++G L  GDRI+ SG   ++   KV
Sbjct: 315 EQINL---TVLERNGNNALVSGALKAGDRIVTSGQIRLSNNSKV 355