Pairwise Alignments

Query, 369 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 367 a.a., Efflux transporter, RND family, MFP subunit from Pseudomonas fluorescens FW300-N2E2

 Score =  108 bits (271), Expect = 2e-28
 Identities = 101/367 (27%), Positives = 176/367 (47%), Gaps = 33/367 (8%)

Query: 14  IRYTAWLAHLLLIAGCSEPTKLERDTLPRVKVAQA-GEKVSDKLFFPAVANAAERSHLSF 72
           I+    L   +L+AGC +   +E+  LPRV V QA   + +  +       A  ++ LSF
Sbjct: 6   IKLVVGLGLCVLLAGCGDEKPVEK-ALPRVFVQQAVPSEYAASVTLTGDVQARVQADLSF 64

Query: 73  RVAGEISKFHVKEGARVKQGDILAEIEPTDYRLAVDNA-------QARFSVIDSQYRRSQ 125
           RV G+I +  V  GARV    +LA ++P D +  VD+A       QAR     + + R Q
Sbjct: 65  RVGGKIIERKVDVGARVSARQVLARLDPRDLQTNVDSAAAQVAAEQARVKQSAAAFVRQQ 124

Query: 126 PLVEKGLLAKSQFDEIAAQRQ-------IARAELELAKLRLSFTQLRAPMDGIISRVSAE 178
            L+ KG  ++S++D   AQ +        A+A+L  A+ +LS+T L A   GII+   AE
Sbjct: 125 KLLPKGYTSQSEYDAAQAQLRSSQSALTAAQAQLANAREQLSYTALIAEAPGIITARQAE 184

Query: 179 QFESVQVGQQIVNIHNIDSVEVLIQLPDRLYATQPTASELAKIETVVRVPSGQVYPARIK 238
             + VQ  + I ++      + +  + + L +  P  S+ A I +++  P+ +     ++
Sbjct: 185 VGQVVQATEPIFSLARDGERDAVFNIYESLLSEPP--SDPAIIISLLDNPAIKT-TGTVR 241

Query: 239 EFTTEPDPATGTFTVTLSL-PMPEQELILDGMAVEVSAKGQHVGLNPLNTISIPIEAIFN 297
           E T      TGT  V ++L  +PE   +  G  V  +AK                E  ++
Sbjct: 242 EITPAVSAQTGTVQVKVTLDDLPEGMRL--GSVVSATAKAAG---------KTAFELPWS 290

Query: 298 ADGDELDKTAQYVWLLNNDNTVSKRQVRLAKASRSHVQVSEGINAGDRLVVAGVARLRDG 357
           A    L + A  VWL++++     + V + +     V VS+G+  G+++++AG   L  G
Sbjct: 291 ALTKNLSEPA--VWLVDSEGKAQLQTVTVGRYLTGKVIVSDGLKGGEKIIIAGGQLLHPG 348

Query: 358 MKVQVLE 364
           ++V++ E
Sbjct: 349 VRVEIAE 355