Pairwise Alignments

Query, 369 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 354 a.a., Efflux membrane fusion protein, RND family from Pseudomonas fluorescens FW300-N2E2

 Score =  129 bits (324), Expect = 1e-34
 Identities = 108/363 (29%), Positives = 172/363 (47%), Gaps = 31/363 (8%)

Query: 19  WLAHL-LLIAGCSEPTKLERDTLPRVKVAQAGEKVSDKLFFPAVANAAERSHLSFRVAGE 77
           W+  + LL+A CS+         P + +            F     A   S++ FRV G 
Sbjct: 5   WMVSVGLLLAACSQEEAPPEPVRPVLSIEVRALDQQALGRFAGNIQARYESNVGFRVPGR 64

Query: 78  ISKFHVKEGARVKQGDILAEIEPTDYRLAVDNAQARFSVIDSQY-------RRSQPLVEK 130
           I+  +V  GA VK+GD+LA ++PTD +  +  AQ   + I++QY       RR Q L ++
Sbjct: 65  IASRNVDVGAEVKKGDLLATLDPTDQQNQLRAAQGDLARIEAQYINAQANARRQQQLFDR 124

Query: 131 GLLAKSQFD-------EIAAQRQIARAELELAKLRLSFTQLRAPMDGIISRVSAEQFESV 183
           G+ A++Q D          A  + ARA +E A+ +L++++L    D +++  +AE  + V
Sbjct: 125 GVGAQAQLDIAQTDLKTTGASLEQARASVEQARDQLNYSELHTDHDAVVTAWNAEAGQVV 184

Query: 184 QVGQQIVNIHNIDSVEVLIQLPDRLYATQPTASELAKIETVVRVPSGQVYPARIKEFTTE 243
             GQQ+V +   D  E +I LP  L    P        E   ++       A ++E   +
Sbjct: 185 TAGQQVVTLARPDIKEAVIDLPADLVDRLPAD---VVFEVTAQMDPSIHTTATVREIEPQ 241

Query: 244 PDPATGTFTVTLSLPMPEQELILDGMAVEVSAKGQHVGLNPLNTISIPIEAIFNADGDEL 303
              AT T    L+L        L G A+ V+       + P   I +P+ A+   DG   
Sbjct: 242 AQSATRTRRARLTLADTPPGFRL-GTAISVTLSST---IEP--RIELPLSALQEIDG--- 292

Query: 304 DKTAQYVWLLN-NDNTVSKRQVRLAKASRSHVQVSEGINAGDRLVVAGVARLRDGMKVQV 362
                 +WL++ +  TVS R VR+ + S S V V+ GI AGDR+V AGV  L+ G KV++
Sbjct: 293 ---KARIWLVDPHSQTVSPRDVRILERSASSVLVANGIKAGDRVVSAGVNSLQPGQKVKL 349

Query: 363 LEE 365
            E+
Sbjct: 350 DED 352