Pairwise Alignments

Query, 369 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 366 a.a., RND efflux membrane fusion protein from Pseudomonas fluorescens FW300-N2E2

 Score =  128 bits (322), Expect = 2e-34
 Identities = 104/363 (28%), Positives = 170/363 (46%), Gaps = 40/363 (11%)

Query: 20  LAHLLLIAGCSEPTKLERDTLPRVKVAQAGEKVSDKLFFPAVANAAERSHLSFRVAGEIS 79
           LA LL   G  EP  +       VK   + + +     +P    A     L+FR+ G++S
Sbjct: 14  LAFLLSACGHDEPVPVAVRPAMVVKPQPSVQAMDS---YPGEVRARFEPDLAFRIGGKVS 70

Query: 80  KFHVKEGARVKQGDILAEIEPTDYRLAVD-------NAQARFSVIDSQYRRSQPLVEKGL 132
           +  V+EG RVK    LAE++P D RL ++        A+A  +++ ++  R + L+E+ +
Sbjct: 71  RRLVEEGQRVKANQPLAELDPEDVRLQLEAARAQVAAAEANLNLVRAERDRYKTLMERQM 130

Query: 133 LAKSQFDEI-------AAQRQIARAELELAKLRLSFTQLRAPMDGIISRVSAEQFESVQV 185
           +++SQ+D          A+ +  +AE ++A  + S++ LRAP DG+++R S E  + V  
Sbjct: 131 VSRSQYDNAENLYRSGTARLKQIKAEFDVANNQASYSILRAPQDGVVARRSVEVGQVVSA 190

Query: 186 GQQIVNIHNIDSVEVLIQLPD----RLYATQPTASELAKIETVVRVPSGQVYPARIKEFT 241
           GQ +  +      EVLI LP+    R    QP + EL            Q +  RI+E +
Sbjct: 191 GQTVFTLATDGEREVLISLPEQGFGRFKIGQPVSVELWS-------QPDQRFSGRIRELS 243

Query: 242 TEPDPATGTFTVTLSLPMPEQELILDGMAVEVSAKGQHVGLNPLNTISIPIEAIFNADGD 301
              DP + TF   ++         L   A         V L      S+P+ A+   +G 
Sbjct: 244 PAADPKSRTFAARVAFTAGNVPAELGQSARVFIQTADKVPL------SVPLSALTAENG- 296

Query: 302 ELDKTAQYVWLLNNDNTVSKRQVRLAKASRSHVQVSEGINAGDRLVVAGVARLRDGMKVQ 361
                A YVW++N +NT+ K  VR+       V V EG+   D +V AGV  L DG +V+
Sbjct: 297 -----ATYVWVVNANNTLKKVPVRVGAFGEKTVPVLEGLGPDDWVVAAGVHVLLDGQQVR 351

Query: 362 VLE 364
            ++
Sbjct: 352 PVD 354