Pairwise Alignments

Query, 369 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 385 a.a., Multidrug efflux RND membrane fusion protein MexC from Pseudomonas fluorescens FW300-N2E2

 Score = 93.2 bits (230), Expect = 1e-23
 Identities = 94/357 (26%), Positives = 165/357 (46%), Gaps = 31/357 (8%)

Query: 25  LIAGCSEPTKLERDTLPRVKVAQAGEK---VSDKLFFPAVANAAERSHLSFRVAGEISKF 81
           L++GC +         P+V V     +   ++ +L  P   +A   + +  +V G I K 
Sbjct: 19  LLSGCKKEEAAPAPPPPQVGVVTLKTQPFTLTSEL--PGRTSAFRVAEVRPQVNGIILKR 76

Query: 82  HVKEGARVKQGDILAEIEPTDYRLAVDNAQARFSVIDSQYRRSQPLVEKGLLAKSQFDEI 141
             KEGA VK G  L +I+P  Y   + +A+A      S   R + LV++  +++ ++D  
Sbjct: 77  LFKEGADVKAGQQLYQIDPAVYEATLKSAEANLRSTKSIADRYKQLVDEQAVSRQEYDTA 136

Query: 142 AAQRQIARAELELAKLRLSFTQLRAPMDGIISRVSAEQFESVQVGQ--QIVNIHNIDSVE 199
            A R  + A L+ A++ + +T++ AP+ G I R S  +   V  GQ   +  I  +D + 
Sbjct: 137 VANRLESEANLQTAQINVRYTKVYAPISGRIGRSSVTEGALVSNGQTDALATIQQLDPIY 196

Query: 200 V--------LIQLPDRLYA--TQPTASELAKIETVVRVPSGQVYPARIK-EFT-TEPDPA 247
           V        L+QL   L +   Q      A ++  + +  G +YP   K EF+    D  
Sbjct: 197 VDVTQSSVELLQLRRELESGRLQKAGDNAAMVK--LTLEDGSLYPHEGKLEFSEVSVDQT 254

Query: 248 TGTFTVTLSLPMPEQELILDGMAVEVSAKGQHVGLNPLNTISIPIEAIFNADGDELDKTA 307
           TG+ T+    P P+  L L GM V    +    G+N    I  P + +      +L  T 
Sbjct: 255 TGSVTLRAVFPNPDHTL-LPGMFVHAQLQ---AGVNSA-AILAPQQGVTR----DLKGTP 305

Query: 308 QYVWLLNNDNTVSKRQVRLAKASRSHVQVSEGINAGDRLVVAGVARLRDGMKVQVLE 364
             + ++  DN V  RQ++ ++   S   + +G+ AGDR++  G+  +R G++V+  E
Sbjct: 306 TAL-VVGADNKVELRQLKASRTVGSQWLIEDGLKAGDRVITEGLQFVRPGVEVKATE 361