Pairwise Alignments

Query, 369 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 394 a.a., RND efflux system, membrane fusion protein CmeA from Pseudomonas fluorescens FW300-N2E2

 Score = 94.7 bits (234), Expect = 4e-24
 Identities = 91/364 (25%), Positives = 170/364 (46%), Gaps = 34/364 (9%)

Query: 20  LAHLLLIAGCS-EPTKLERDTLPRVKVA----QAGEKVSDKLFFPAVANAAERSHLSFRV 74
           +A   +++GC+ E         P+V V     QA    +D    P   +A   + +  +V
Sbjct: 26  IAFATMLSGCNKEQAAATPAQAPQVSVVTLKPQAVTLFND---LPGRTSAYRLAEVRPQV 82

Query: 75  AGEISKFHVKEGARVKQGDILAEIEPTDYRLAVDNAQARFSVIDSQYRRSQPLVEKGLLA 134
            G + K   KEGA +K G  L +I+P+ Y + + +AQA      S   R + L+++  ++
Sbjct: 83  DGIVLKRLFKEGADIKAGQQLYQIDPSTYEVTLASAQASLEQSRSLTTRYRQLIDEQAVS 142

Query: 135 KSQFDEIAAQRQIARAELELAKLRLSFTQLRAPMDGIISRVSAEQFESVQVGQ--QIVNI 192
           K ++D   +Q+  A A+++ A++ L +T++ AP+ G I R +  +   V  GQ   +  I
Sbjct: 143 KQEYDTARSQQMQAEAQVKGAQINLRYTKMFAPISGRIGRSAVTEGALVSNGQAAPLAII 202

Query: 193 HNIDSVEV--------LIQLPDRLYA--TQPTASELAKIETVVRVPSGQVYPAR--IKEF 240
             +D + V        +++L   L +   Q TA   AK+   ++   G  YP +  ++  
Sbjct: 203 QQLDPIYVDVTQPYGEVLKLRRALESGQLQKTADRAAKVSLTLQ--DGSQYPLQGSLEFS 260

Query: 241 TTEPDPATGTFTVTLSLPMPEQELILDGMAVEVSAKGQHVGLNPLNTISIPIEAIFNADG 300
               D ATG+ T+    P P+  L+L G+ V    + + V    +    I +        
Sbjct: 261 EVSVDEATGSVTLRAVFPNPD-HLLLPGIFVHARLQ-EGVAEQAILAPQIGVTRDLKGTP 318

Query: 301 DELDKTAQYVWLLNNDNTVSKRQVRLAKASRSHVQVSEGINAGDRLVVAGVARLRDGMKV 360
             +  TA        DN V +RQ+++ +   ++V V  G++AGD+++V G+  ++ G+ V
Sbjct: 319 TAMVVTA--------DNKVEQRQLKVGRTVGANVLVESGLSAGDKIIVEGLQFIKPGITV 370

Query: 361 QVLE 364
              E
Sbjct: 371 VAQE 374