Pairwise Alignments

Query, 369 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 355 a.a., Efflux membrane fusion protein, RND family from Pseudomonas fluorescens FW300-N1B4

 Score =  111 bits (278), Expect = 3e-29
 Identities = 102/361 (28%), Positives = 167/361 (46%), Gaps = 40/361 (11%)

Query: 24  LLIAGCSEPTKLERDTLPRVKVAQAGEKVSDKLFFPAVANAAERSHLSFRVAGEISKFHV 83
           LL+  CS+         P + V        +   F     A   S++ FRV G I+  +V
Sbjct: 11  LLLVACSKEEAPPEPVRPVLSVEVKALNQENLGRFAGSIQARYESNVGFRVPGRIASRNV 70

Query: 84  KEGARVKQGDILAEIEPTDYRLAVDNAQARFSVIDSQY-------RRSQPLVEKGLLAKS 136
             GA V++G +LA ++PTD +  + +AQ   + + +Q        RR Q L  +G+ A++
Sbjct: 71  DVGAEVQKGALLATLDPTDQQNQLRSAQGDLARVQAQLINAQANARRQQELFNRGVGAQA 130

Query: 137 QFD-------EIAAQRQIARAELELAKLRLSFTQLRAPMDGIISRVSAEQFESVQVGQQI 189
           Q D          A    ARA ++ A+ +L++ +LRA    I++  +AE  + V  GQQ+
Sbjct: 131 QLDIAQTDLKTTQASLDQARAAVDQAQDQLNYVELRADHKAIVTAWNAEAGQVVTAGQQV 190

Query: 190 VNIHNIDSVEVLIQLPDRLYATQPTASELAKIETVVRVPSGQVYP-----ARIKEFTTEP 244
           V +   D  E +I LPD L    P        + V +V S Q+ P     A ++E   + 
Sbjct: 191 VTLAQPDIKEAVIDLPDTLVDQLPA-------DVVFQVAS-QLDPSITSTAIVREIEPQA 242

Query: 245 DPATGTFTVTLSLPMPEQELILDGMAVEVSAKGQHVGLNPLNTISIPIEAIFNADGDELD 304
             AT T    LSL        L G A+ V+       + P   + +P+ A+   DG    
Sbjct: 243 QSATRTRRARLSLTDTPPGFRL-GTAISVTLSS---AIKP--RLELPVSALQEVDG---- 292

Query: 305 KTAQYVWLLN-NDNTVSKRQVRLAKASRSHVQVSEGINAGDRLVVAGVARLRDGMKVQVL 363
                +W+++    TVS R+V L   + + V ++ G+  G+R+V AGV  L+ G KV++ 
Sbjct: 293 --KLRIWVVDPQTQTVSPREVSLISRTDATVVLANGVKTGERVVSAGVNSLKPGQKVKID 350

Query: 364 E 364
           E
Sbjct: 351 E 351