Pairwise Alignments

Query, 369 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 359 a.a., RND family efflux transporter, MFP subunit from Pseudomonas stutzeri RCH2

 Score =  124 bits (312), Expect = 3e-33
 Identities = 96/357 (26%), Positives = 167/357 (46%), Gaps = 21/357 (5%)

Query: 18  AWLA----HLLLIAGCSEPTKLERDTLPRVKVAQA---GEKVSDKLFFPAVANAAERSHL 70
           AWL      L L+ GCS   +   +  PRV + +     E  ++ L F  V  +   + L
Sbjct: 12  AWLTIIACALPLLGGCSSEAEPAPEP-PRVALVEPLRPAESKAEALRFSGVVQSVTSTQL 70

Query: 71  SFRVAGEISKFHVKEGARVKQGDILAEIEPTDYRLAVDNAQARFSVIDSQYRRSQPLVEK 130
           SF V+G I +  + EG RV++G  LA+++ TDYRL +  A+AR   +++   R + L+ +
Sbjct: 71  SFEVSGRIERILIDEGTRVRRGQTLAQLDRTDYRLQLREAEARLRQLEADLARKRTLLAE 130

Query: 131 GLLAKSQFDEIAAQRQIARAELELAKLRLSFTQLRAPMDGIISRVSAEQFESVQVGQQIV 190
           G+LA +  + + A    AR   + A+  +  + L AP DG+++R  AE    V VG  + 
Sbjct: 131 GILAPAAIEALQANTVAARVARDSAQRNIDHSTLTAPFDGVVARRLAEPDMVVAVGTPVF 190

Query: 191 NIHNIDSVEVLIQLPDRLYATQPTASEL-AKIETVVRVPSGQVYPARIKEFTTEPDPATG 249
            + +   +EV + LP+    + P   EL A+ E V+   +    P R KE +T+P     
Sbjct: 191 EMQDNRHIEVSVDLPESAALSIPLGPELQAEAELVI---ADLRLPLRYKEHSTQPREGAR 247

Query: 250 TFTVTLSLPMPEQELILDGMAVEVSAKGQHVGLNPLNTISIPIEAI-FNADGDELDKTAQ 308
           T+ + L    PE   +L GMA+ V  +         +   +P+ A+   +DG        
Sbjct: 248 TYRLVLQGEPPEDFNLLPGMAMRVRLERPAQPETDNDGFRLPLSALQTGSDG------KH 301

Query: 309 YVWLLNNDNTVSKRQVRLAKASRSHVQV-SEGINAGDRLVVAGVARLRDGMKVQVLE 364
           ++W    D    +  V L +       +  + + A   ++VAG ++L D   ++  E
Sbjct: 302 FIWQA-ADGRARRLAVELQQVEGDQALIRGDALQAQLPIIVAGGSKLHDDQPIEARE 357