Pairwise Alignments

Query, 369 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 380 a.a., RND family efflux transporter, MFP subunit from Pseudomonas stutzeri RCH2

 Score = 95.9 bits (237), Expect = 2e-24
 Identities = 93/358 (25%), Positives = 158/358 (44%), Gaps = 25/358 (6%)

Query: 20  LAHLLLIAGCSEPTKLERDTLPRVKVAQA-GEKVSDKLFFPAVANAAERSHLSFRVAGEI 78
           LA  + +AGC E         P+V +     E  +     P    A   + +  +V G I
Sbjct: 14  LAMAVFLAGCQEEAAPPAQQKPKVGIVTLQAEPFAVTTELPGRTRAYRIAEVRPQVNGII 73

Query: 79  SKFHVKEGARVKQGDILAEIEPTDYRLAVDNAQARFSVIDSQYRRSQPLVEKGLLAKSQF 138
            K    EG+ VK G  L +I+ + Y   + +AQA  +   S   R   LV+   ++K  +
Sbjct: 74  QKRLFTEGSDVKAGQQLYQIDASVYEATLKSAQASVASSKSLADRYAELVKDQAVSKQAY 133

Query: 139 DEIAAQRQIARAELELAKLRLSFTQLRAPMDGIISRVSAEQFESVQVG--QQIVNIHNID 196
           DE  A    A AELE A++ + +T++ AP+ G + R +  +   V  G  Q++  I  +D
Sbjct: 134 DEARAASLQAEAELERARIDVRYTKVLAPISGRVGRSAVTEGALVSNGQAQELATIQQLD 193

Query: 197 SVEVLIQLPDR-LYA---------TQPTASELAKIETVVRVPSGQVYPARIKEFTTEPDP 246
            + V +  P R L A          Q +    AK+   +   S   +  +++      D 
Sbjct: 194 PIYVDVTQPARDLLALRRDLAEGRLQKSGDNAAKVTLKLEDGSDYAHEGKLEFSEVTVDA 253

Query: 247 ATGTFTVTLSLPMPEQELILDGMAVEVSAKGQHVGLNPLNTISIPIEAIF-NADGDELDK 305
            TG+ T+    P P+++L L GM V      Q V       I +P + +  N  G   D 
Sbjct: 254 GTGSVTLRAVFPNPDKDL-LPGMFVH----AQLVAGMKSEAILVPQQGVTRNTKG---DP 305

Query: 306 TAQYVWLLNNDNTVSKRQVRLAKASRSHVQVSEGINAGDRLVVAGVARLRDGMKVQVL 363
           TA  V   N ++ V  R ++  +A  +   V EG+  GDR++  G+  ++ G++V+ +
Sbjct: 306 TAMVV---NAESKVEVRPIKTERAVGNRWLVGEGLQPGDRVITEGLQFIQPGVEVEAV 360