Pairwise Alignments

Query, 369 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 366 a.a., RND family efflux transporter, MFP subunit from Pseudomonas stutzeri RCH2

 Score =  110 bits (276), Expect = 5e-29
 Identities = 96/356 (26%), Positives = 163/356 (45%), Gaps = 34/356 (9%)

Query: 24  LLIAGCSEPTKLERDTLPR-VKVAQAGEKVSDKLFFPAVANAAERSHLSFRVAGEISKFH 82
           L+  G  EP +     LPR V V Q       +  +P   +A     L+FR+ G++ +  
Sbjct: 18  LVACGNGEPPQ----QLPRPVMVVQPQPASEARESYPGEVHARYEPELAFRIGGKVVERL 73

Query: 83  VKEGARVKQGDILAEIEPTDYRLAVDN-------AQARFSVIDSQYRRSQPLVEKGLLAK 135
           V+ G RV++   LA ++P D RL +D        A+A   V  +++ R + L+ + L+++
Sbjct: 74  VEAGDRVRKDQPLARLDPQDVRLQLDGMRAQVAAAEANLRVAKAEHDRYKALLGRQLVSQ 133

Query: 136 SQFDE-------IAAQRQIARAELELAKLRLSFTQLRAPMDGIISRVSAEQFESVQVGQQ 188
           SQFD         AA+ Q ARAE ++A  ++ +  LRA  DG+I++   E  + V  GQ 
Sbjct: 134 SQFDNADNAYRAAAARLQQARAEFDVASNQVDYAVLRATSDGLIAQRRIEVGQVVAAGQT 193

Query: 189 IVNIHNIDSVEVLIQLPDRLYATQPTASELAKIETVVRVPSGQVYPARIKEFTTEPDPAT 248
              +      EV I LP++         +   +E  +    G+ Y  +I+E +   D  +
Sbjct: 194 AFVLAADGEREVAIDLPEQSLERYRVGQD---VEVELWSQPGRHYLGKIRELSPAADAQS 250

Query: 249 GTFTVTLSLPMPEQELILDGMAVEVSAKGQHVGLNPLNTISIPIEAIFNADGDELDKTAQ 308
            T++  ++    E    L   A+    +   V L      ++P+ A+    G        
Sbjct: 251 RTYSARVAFSEQEVPAELGQSALVSIRRAGEVAL------AVPLSALSAEQG------RA 298

Query: 309 YVWLLNNDNTVSKRQVRLAKASRSHVQVSEGINAGDRLVVAGVARLRDGMKVQVLE 364
           +VW L  D+TV + +VR        V V EG+ A D +V+AGV  L D   V+ ++
Sbjct: 299 HVWRLKADSTVERVEVRTGPFGEQLVPVLEGLEADDWIVLAGVQMLSDHQSVRPVD 354