Pairwise Alignments

Query, 369 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 363 a.a., Secretion protein HlyD from Pseudomonas syringae pv. syringae B728a

 Score =  110 bits (274), Expect = 8e-29
 Identities = 97/368 (26%), Positives = 169/368 (45%), Gaps = 35/368 (9%)

Query: 15  RYTAWLAHLLLIA--GCSEPTKLERDTLPRVKVAQAGEKVSDKLFFPAVANAAERSHLSF 72
           R   WL  +L++A  GC +    E    P +      ++ +    F  V        L F
Sbjct: 11  RSRCWLICILIVALPGCRDKPLREVVERPVLFTEIVDQRSASHGRFAGVIQPQYEVALGF 70

Query: 73  RVAGEISKFHVKEGARVKQGDILAEIEPTD--YRL-----AVDNAQARFSVIDSQYRRSQ 125
           RVAG ++  H + G RV++GD+LA +EP D  +RL      +  AQ+ +     +  R Q
Sbjct: 71  RVAGRLASRHAEIGDRVRKGDLLATLEPGDQQHRLRARQAELGKAQSAWQQARDELTRYQ 130

Query: 126 PLVEKGLLAKSQFDEI-------AAQRQIARAELELAKLRLSFTQLRAPMDGIISRVSAE 178
            L E+G+ ++++ D++        A R  AR  ++ A   +S+T L A  DG+I+   AE
Sbjct: 131 QLYERGIGSRARMDQLDNDLRTQDALRNQARVAVQQAGDHVSYTHLSAEFDGLITGWQAE 190

Query: 179 QFESVQVGQQIVNIHNIDSVEVLIQLPDRLYATQPTASELAKIETVVRVPSGQVYPARIK 238
             + +  GQ +V++   DS E ++ LP        +  E  +I  + ++       A ++
Sbjct: 191 VGQVMATGQAVVSLARPDSREAVVDLP------LGSLDERHRIRVISQINEQLSVAADVR 244

Query: 239 EFTTEPDPATGTFTVTLSLPMPEQELILDGMAVEVSAKGQHVGLNPLNTISIPIEAIFNA 298
           +   + +  T T  V L+L  P     L G  V V   G     + L     P  A+   
Sbjct: 245 QLAPQINAETRTQRVRLALQNPADSFRL-GSTVTVEISGDAPAFHEL-----PGSAVLQR 298

Query: 299 DGDELDKTAQYVWLLN-NDNTVSKRQVRLAKASRSHVQVSEGINAGDRLVVAGVARLRDG 357
           DG         VW+++   +T+  R V++   S S V+VS  ++ G+++V AGV  ++ G
Sbjct: 299 DG------TYQVWVIDPTTSTLVPRAVQVLARSGSTVRVSGALHEGEKVVTAGVNGMQSG 352

Query: 358 MKVQVLEE 365
            K+++  E
Sbjct: 353 QKIRLQRE 360